Variant report

Variant	rs6080338
Chromosome Location	chr20:16605938-16605939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4813230	0.81[ASN][1000 genomes]
rs4813231	0.88[CEU][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4813232	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs4814518	0.81[ASN][1000 genomes]
rs6034555	0.82[ASN][1000 genomes]
rs6044174	0.81[ASN][1000 genomes]
rs6044175	0.82[ASN][1000 genomes]
rs6080332	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6080333	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6080334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6111205	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6080338	C20orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16603400-16607000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:16604800-16606200	Weak transcription	Placenta	Placenta
3	chr20:16605400-16606600	Enhancers	Fetal Stomach	stomach
4	chr20:16605600-16606200	Enhancers	Fetal Lung	lung
5	chr20:16605600-16628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr20:16605800-16606000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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