Variant report

Variant	rs60349154
Chromosome Location	chr9:104214755-104214756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2150736	0.89[EUR][1000 genomes]
rs55785343	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55934101	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55956510	0.93[EUR][1000 genomes]
rs57786986	1.00[EUR][1000 genomes]
rs58681636	0.93[EUR][1000 genomes]
rs59291632	0.93[EUR][1000 genomes]
rs59756949	0.93[EUR][1000 genomes]
rs66532188	0.93[EUR][1000 genomes]
rs66662619	0.93[EUR][1000 genomes]
rs66750836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67190360	0.93[EUR][1000 genomes]
rs67526534	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7035564	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7043814	0.93[EUR][1000 genomes]
rs72743360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72743361	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72743362	0.89[EUR][1000 genomes]
rs73501217	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104212000-104216000	Weak transcription	Fetal Heart	heart
2	chr9:104212000-104216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:104212000-104221200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:104212000-104241400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:104212200-104214800	Weak transcription	Adipose Nuclei	Adipose
6	chr9:104212200-104219000	Weak transcription	Liver	Liver
7	chr9:104213800-104214800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:104213800-104215600	ZNF genes & repeats	Fetal Intestine Large	intestine
9	chr9:104213800-104215600	ZNF genes & repeats	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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