Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13288931	0.88[AFR][1000 genomes]
rs17187073	1.00[GIH][hapmap]
rs55785343	0.83[EUR][1000 genomes]
rs55934101	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55956510	0.83[EUR][1000 genomes]
rs57786986	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58681636	0.83[EUR][1000 genomes]
rs59291632	0.83[EUR][1000 genomes]
rs59756949	0.83[EUR][1000 genomes]
rs60349154	0.89[EUR][1000 genomes]
rs66532188	0.83[EUR][1000 genomes]
rs66662619	0.83[EUR][1000 genomes]
rs66750836	0.89[EUR][1000 genomes]
rs67190360	0.83[EUR][1000 genomes]
rs67526534	0.83[EUR][1000 genomes]
rs7035564	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs7043814	0.83[EUR][1000 genomes]
rs72743360	0.89[EUR][1000 genomes]
rs72743361	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72743362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501217	0.83[EUR][1000 genomes]
rs7849490	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3404236	chr9:104217731-104222129	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3410243	chr9:104218581-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3403455	chr9:104218656-104221504	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104212000-104221200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:104212000-104241400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:104212200-104219000	Weak transcription	Liver	Liver
4	chr9:104216800-104219600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:104216800-104220400	Weak transcription	Fetal Intestine Large	intestine
6	chr9:104217000-104227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:104217800-104219000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:104218000-104219000	Enhancers	Adipose Nuclei	Adipose
9	chr9:104218000-104219400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:104218200-104222000	Enhancers	HepG2	liver
11	chr9:104218200-104223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:104218600-104220000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:104218600-104228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:104218800-104219000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:104218800-104219600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:104218800-104219600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:104218800-104223400	Weak transcription	NH-A	brain

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