Variant report

Variant	rs17187073
Chromosome Location	chr9:104194487-104194488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55952607	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7035564	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs717860	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1067884	chr9:104188775-104195222	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv523287	chr9:104191392-104202803	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17187073	ALDOB	cis	brain	BrainEAC

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104188200-104196800	Weak transcription	Left Ventricle	heart
2	chr9:104191000-104194600	Weak transcription	Stomach Mucosa	stomach
3	chr9:104192400-104195000	Enhancers	HepG2	liver
4	chr9:104192800-104195200	Transcr. at gene 5' and 3'	Liver	Liver
5	chr9:104193000-104196600	Enhancers	Fetal Intestine Large	intestine
6	chr9:104193200-104195800	Enhancers	Pancreas	Pancrea
7	chr9:104193400-104196800	Weak transcription	Small Intestine	intestine
8	chr9:104193800-104194600	Flanking Active TSS	Fetal Intestine Small	intestine
9	chr9:104194000-104195000	Active TSS	Duodenum Mucosa	Duodenum
10	chr9:104194000-104197600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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