Variant report

Variant	rs717860
Chromosome Location	chr9:104201312-104201313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17187073	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55952607	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv523287	chr9:104191392-104202803	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104195600-104207200	Enhancers	HepG2	liver
2	chr9:104196800-104201600	Enhancers	Stomach Mucosa	stomach
3	chr9:104197000-104211400	Weak transcription	Right Atrium	heart
4	chr9:104197200-104203200	Weak transcription	Pancreas	Pancrea
5	chr9:104197200-104204600	Weak transcription	Left Ventricle	heart
6	chr9:104197400-104209600	Enhancers	Fetal Intestine Large	intestine
7	chr9:104198200-104204600	Enhancers	Fetal Intestine Small	intestine
8	chr9:104199400-104201800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:104200000-104204600	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:104200400-104202600	Enhancers	Liver	Liver
11	chr9:104200800-104204600	Weak transcription	Fetal Heart	heart
12	chr9:104200800-104206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:104201200-104201600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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