Variant report

Variant	rs60354115
Chromosome Location	chr1:174086292-174086293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174084142..174085721-chr1:174085746..174087770,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10158289	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10912734	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12079063	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12085290	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12087441	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12094341	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12563301	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2143114	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2294492	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2860847	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2901785	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4650945	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4652234	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4652237	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57919173	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6425274	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6656188	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6658543	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6672986	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6681618	0.81[EUR][1000 genomes]
rs6696076	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7526024	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7533430	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7553788	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1008314	chr1:174080192-174311023	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv535207	chr1:174080192-174311023	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174084600-174088000	Weak transcription	Fetal Heart	heart

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