Variant report
Variant | rs6425274 |
---|---|
Chromosome Location | chr1:174113408-174113409 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10158115 | 0.81[EUR][1000 genomes] |
rs10158289 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10912734 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10912761 | 0.81[EUR][1000 genomes] |
rs12079063 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12085290 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12087441 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12094341 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12563301 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2064149 | 0.87[EUR][1000 genomes] |
rs2143114 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2294492 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2860847 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2901785 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4650945 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4650989 | 0.82[EUR][1000 genomes] |
rs4650990 | 0.81[EUR][1000 genomes] |
rs4652234 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4652237 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4652294 | 0.86[EUR][1000 genomes] |
rs57919173 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs60354115 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6656188 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6658543 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6667267 | 0.87[EUR][1000 genomes] |
rs6670617 | 0.85[EUR][1000 genomes] |
rs6672986 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6681390 | 0.86[EUR][1000 genomes] |
rs6681618 | 0.90[EUR][1000 genomes] |
rs6690570 | 0.86[EUR][1000 genomes] |
rs6695636 | 0.82[EUR][1000 genomes] |
rs6696076 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7512930 | 0.81[EUR][1000 genomes] |
rs7523460 | 0.81[EUR][1000 genomes] |
rs7526024 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7533430 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7537517 | 0.88[EUR][1000 genomes] |
rs7552830 | 0.81[EUR][1000 genomes] |
rs7553788 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7555067 | 0.82[EUR][1000 genomes] |
rs972361 | 0.87[EUR][1000 genomes] |
rs9787001 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv831937 | chr1:173949373-174131463 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
2 | nsv465661 | chr1:174014507-174152688 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
3 | nsv548193 | chr1:174014507-174152688 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
4 | nsv872552 | chr1:174061844-174469748 | Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
5 | nsv1008314 | chr1:174080192-174311023 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
6 | nsv535207 | chr1:174080192-174311023 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:174113000-174113800 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
2 | chr1:174113000-174113800 | Enhancers | Colonic Mucosa | Colon |
3 | chr1:174113400-174113600 | Enhancers | Duodenum Mucosa | Duodenum |
4 | chr1:174113400-174113800 | Flanking Active TSS | HepG2 | liver |
5 | chr1:174113400-174114000 | Enhancers | Primary B cells from peripheral blood | blood |