Variant report

Variant rs4650989
Chromosome Location chr1:174258877-174258878
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174214600-174270000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr1:174232400-174259400 Weak transcription HSMM muscle
3 chr1:174232600-174262000 Weak transcription HMEC breast
4 chr1:174236000-174259800 Weak transcription Brain Cingulate Gyrus brain
5 chr1:174238200-174261200 Weak transcription Hela-S3 cervix
6 chr1:174239600-174262400 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:174240000-174270600 Weak transcription Colonic Mucosa Colon
8 chr1:174241000-174261600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr1:174242600-174260000 Weak transcription NHDF-Ad bronchial
10 chr1:174242800-174277200 Weak transcription Muscle Satellite Cultured Cells --
11 chr1:174243800-174275800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:174244400-174274000 Weak transcription Fetal Heart heart
13 chr1:174246200-174284200 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr1:174248000-174259000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:174248000-174259200 Weak transcription Spleen Spleen
16 chr1:174248200-174262200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:174248800-174265000 Weak transcription Small Intestine intestine
18 chr1:174249200-174259800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr1:174249800-174262400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr1:174249800-174270000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:174250000-174260600 Weak transcription Brain Angular Gyrus brain
22 chr1:174250600-174270200 Weak transcription Psoas Muscle Psoas
23 chr1:174250800-174259000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:174251000-174262000 Weak transcription Placenta Placenta
25 chr1:174251200-174275800 Weak transcription Stomach Smooth Muscle stomach
26 chr1:174251400-174259000 Weak transcription Left Ventricle heart
27 chr1:174251400-174270000 Weak transcription Brain Substantia Nigra brain
28 chr1:174251400-174270000 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr1:174251400-174276000 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:174253400-174260200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:174254600-174262200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:174255000-174260400 Strong transcription Primary T helper cells PMA-I stimulated --
33 chr1:174256200-174259200 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr1:174256400-174259800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:174256400-174260200 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
36 chr1:174256400-174260400 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr1:174256400-174260400 Strong transcription Primary T killer naive cells fromperipheralblood blood
38 chr1:174256400-174260400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:174256400-174260400 ZNF genes & repeats GM12878-XiMat blood
40 chr1:174256600-174260200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
41 chr1:174256600-174260400 Strong transcription Duodenum Smooth Muscle Duodenum
42 chr1:174256600-174262000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:174256800-174260000 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:174256800-174261400 ZNF genes & repeats Primary hematopoietic stem cells blood
45 chr1:174257000-174260400 Weak transcription NHLF lung
46 chr1:174257000-174261000 ZNF genes & repeats Primary B cells from peripheral blood blood
47 chr1:174257000-174263200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
48 chr1:174257200-174260600 Strong transcription Duodenum Mucosa Duodenum
49 chr1:174257600-174259600 Strong transcription Primary T cells fromperipheralblood blood
50 chr1:174257600-174259800 ZNF genes & repeats Primary T cells from cord blood blood

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