Variant report

Variant	rs6036200
Chromosome Location	chr20:22715881-22715882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:157)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:157 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr20:22715780-22715930	NHLF	lung:	n/a	n/a
2	CTCF	chr20:22715740-22715890	HMEC	breast:	n/a	n/a
3	CTCF	chr20:22715676-22715910	K562	blood:	n/a	n/a
4	CTCF	chr20:22715803-22715903	Kidney_OC	kidney:	n/a	n/a
5	ZNF143	chr20:22715800-22715883	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr20:22715616-22716017	A549	lung:	n/a	n/a
7	CTCF	chr20:22715670-22716030	K562	blood:	n/a	n/a
8	RAD21	chr20:22715670-22716047	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr20:22715780-22715930	HCT-116	colon:	n/a	n/a
10	CTCF	chr20:22715768-22715922	GM20000	blood:	n/a	n/a
11	CTCF	chr20:22715740-22715890	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr20:22715740-22715890	HEK293	kidney:	n/a	n/a
13	SMC3	chr20:22715667-22716001	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr20:22715740-22715890	GM12865	blood:	n/a	n/a
15	RAD21	chr20:22715736-22715932	K562	blood:	n/a	n/a
16	CTCF	chr20:22715748-22715955	GM19238	blood:	n/a	n/a
17	KAP1	chr20:22715825-22716029	U2OS	brain:	n/a	n/a
18	RAD21	chr20:22715671-22716140	MCF-7	breast:	n/a	n/a
19	CTCF	chr20:22715740-22715890	GM12871	blood:	n/a	n/a
20	CTCF	chr20:22715760-22715910	HCM	heart:	n/a	n/a
21	RAD21	chr20:22715595-22716102	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr20:22715740-22715890	WI-38	lung:	n/a	n/a
23	CTCF	chr20:22715740-22715890	GM12874	blood:	n/a	n/a
24	CTCF	chr20:22715740-22715890	GM06990	blood:	n/a	n/a
25	CTCF	chr20:22715740-22715890	HEEpiC	esophagus:	n/a	n/a
26	CTCF	chr20:22715740-22715890	GM12866	blood:	n/a	n/a
27	CTCF	chr20:22715760-22715910	A549	lung:	n/a	n/a
28	CTCF	chr20:22715729-22715958	Fibrobl	skin:	n/a	n/a
29	CTCF	chr20:22715740-22715890	SAEC	small airway:	n/a	n/a
30	CTCF	chr20:22715777-22715906	GM13976	blood:	n/a	n/a
31	RAD21	chr20:22715775-22715903	K562	blood:	n/a	n/a
32	CTCF	chr20:22715760-22715910	GM12869	blood:	n/a	n/a
33	FOXA2	chr20:22715624-22715919	HepG2	liver:	n/a	n/a
34	CTCF	chr20:22715760-22715910	MCF-7	breast:	n/a	n/a
35	CTCF	chr20:22715760-22715910	HVMF	connective:	n/a	n/a
36	CTCF	chr20:22715740-22715890	GM12867	blood:	n/a	n/a
37	CTCF	chr20:22715740-22715890	HL-60	blood:	n/a	n/a
38	CTCF	chr20:22715760-22715910	HFF	foreskin:	n/a	n/a
39	CTCF	chr20:22715760-22715910	GM12870	blood:	n/a	n/a
40	CTCF	chr20:22715740-22715890	GM12875	blood:	n/a	n/a
41	FOXA1	chr20:22715543-22715916	HepG2	liver:	n/a	n/a
42	CTCF	chr20:22715740-22715890	AG10803	skin:	n/a	n/a
43	CTCF	chr20:22715762-22715921	SK-N-SH_RA	brain:	n/a	n/a
44	CTCF	chr20:22715740-22715890	HRE	kidney:	n/a	n/a
45	CTCF	chr20:22715740-22715890	HFF-Myc	foreskin:	n/a	n/a
46	CTCF	chr20:22715712-22715972	LNCaP	prostate:	n/a	n/a
47	ZNF143	chr20:22715667-22716005	H1-hESC	embryonic stem cell:	n/a	n/a
48	ZNF143	chr20:22715676-22715904	GM12878	blood:	n/a	n/a
49	CTCF	chr20:22715740-22715890	GM12872	blood:	n/a	n/a
50	CTCF	chr20:22715733-22715922	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000265151	TF binding region
KRT18P3	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13036614	0.82[EUR][1000 genomes]
rs13036740	0.82[EUR][1000 genomes]
rs13037649	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13037976	0.81[EUR][1000 genomes]
rs13040538	0.81[EUR][1000 genomes]
rs4371419	0.82[EUR][1000 genomes]
rs4514951	0.82[EUR][1000 genomes]
rs4603850	0.82[EUR][1000 genomes]
rs6036197	0.81[EUR][1000 genomes]
rs6036203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036205	0.82[EUR][1000 genomes]
rs6036206	0.82[EUR][1000 genomes]
rs6036212	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036213	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048280	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048283	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048284	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6048291	0.82[EUR][1000 genomes]
rs6048298	0.82[EUR][1000 genomes]
rs6048300	0.81[EUR][1000 genomes]
rs6048326	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048327	0.81[EUR][1000 genomes]
rs6048331	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6048332	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6048333	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6075943	0.82[EUR][1000 genomes]
rs6113789	0.81[EUR][1000 genomes]
rs7262725	0.82[EUR][1000 genomes]
rs7270196	0.82[EUR][1000 genomes]
rs7270374	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs965762	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1057305	chr20:22711334-22733613	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22715400-22716200	Enhancers	Stomach Mucosa	stomach

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