Variant report

Variant	rs6036212
Chromosome Location	chr20:22738672-22738673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22737582..22739507-chr20:22742394..22744607,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11087395	0.84[EUR][1000 genomes]
rs11907108	0.83[EUR][1000 genomes]
rs12479587	0.85[EUR][1000 genomes]
rs13036614	0.83[EUR][1000 genomes]
rs13036740	0.83[EUR][1000 genomes]
rs13037649	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13037911	0.82[EUR][1000 genomes]
rs13037976	0.84[EUR][1000 genomes]
rs13038208	0.81[EUR][1000 genomes]
rs13038520	0.81[EUR][1000 genomes]
rs13039411	0.81[EUR][1000 genomes]
rs13039474	0.82[EUR][1000 genomes]
rs13040538	0.82[EUR][1000 genomes]
rs13044931	0.82[EUR][1000 genomes]
rs4371419	0.82[EUR][1000 genomes]
rs4514951	0.82[EUR][1000 genomes]
rs4603850	0.82[EUR][1000 genomes]
rs6036197	0.81[EUR][1000 genomes]
rs6036200	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036203	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036204	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036205	0.83[EUR][1000 genomes]
rs6036206	0.83[EUR][1000 genomes]
rs6036213	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048291	0.82[EUR][1000 genomes]
rs6048298	0.82[EUR][1000 genomes]
rs6048300	0.82[EUR][1000 genomes]
rs6048326	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6048327	0.84[EUR][1000 genomes]
rs6048328	0.83[EUR][1000 genomes]
rs6048331	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6048332	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6048333	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075943	0.83[EUR][1000 genomes]
rs6113789	0.83[EUR][1000 genomes]
rs7262725	0.82[EUR][1000 genomes]
rs7270196	0.82[EUR][1000 genomes]
rs7270365	0.83[EUR][1000 genomes]
rs7270374	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs965762	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs965763	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528221	chr20:22732749-22767280	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22726000-22739000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:22734800-22745200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:22736600-22739200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:22736600-22741200	Weak transcription	Esophagus	oesophagus
5	chr20:22736600-22741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:22737400-22739000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:22737600-22738800	Enhancers	K562	blood
8	chr20:22737600-22739400	Enhancers	HSMMtube	muscle
9	chr20:22737800-22738800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr20:22737800-22739600	Enhancers	Aorta	Aorta
11	chr20:22737800-22740000	Enhancers	HSMM	muscle
12	chr20:22737800-22749000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:22738000-22738800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr20:22738000-22739200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:22738000-22739400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr20:22738000-22739400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr20:22738000-22739400	Enhancers	NH-A	brain
18	chr20:22738000-22739600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr20:22738000-22739600	Enhancers	Fetal Muscle Leg	muscle
20	chr20:22738000-22739600	Enhancers	Placenta	Placenta
21	chr20:22738400-22739400	Enhancers	Dnd41	blood
22	chr20:22738600-22739000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr20:22738600-22739000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr20:22738600-22739200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr20:22738600-22739400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr20:22738600-22740800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr20:22738600-22743000	Weak transcription	A549	lung

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