Variant report

Variant	rs6036203
Chromosome Location	chr20:22725434-22725435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-16	chr20:22725329-22725519	NONHSAT079010

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11087395	0.80[EUR][1000 genomes]
rs12479587	0.80[EUR][1000 genomes]
rs13036614	0.83[EUR][1000 genomes]
rs13036740	0.83[EUR][1000 genomes]
rs13037649	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13037976	0.82[EUR][1000 genomes]
rs4371419	0.81[EUR][1000 genomes]
rs4514951	0.81[EUR][1000 genomes]
rs4603850	0.81[EUR][1000 genomes]
rs6036200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036205	0.83[EUR][1000 genomes]
rs6036206	0.83[EUR][1000 genomes]
rs6036212	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036213	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048280	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048283	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6048284	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6048291	0.81[EUR][1000 genomes]
rs6048298	0.81[EUR][1000 genomes]
rs6048300	0.80[EUR][1000 genomes]
rs6048326	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048327	0.82[EUR][1000 genomes]
rs6048331	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048332	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048333	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6075943	0.83[EUR][1000 genomes]
rs6113789	0.80[EUR][1000 genomes]
rs7262725	0.81[EUR][1000 genomes]
rs7270196	0.81[EUR][1000 genomes]
rs7270365	0.81[EUR][1000 genomes]
rs7270374	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965762	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1057305	chr20:22711334-22733613	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22723400-22725800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr20:22723400-22726000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:22723400-22726000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:22723400-22726000	Enhancers	HMEC	breast
5	chr20:22723600-22726800	Enhancers	NHEK	skin
6	chr20:22724200-22726000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links