Variant report

Variant	rs6036821
Chromosome Location	chr20:24472391-24472392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24458098..24460302-chr20:24472208..24475161,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56123439	1.00[EUR][1000 genomes]
rs57891254	1.00[EUR][1000 genomes]
rs6049722	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049726	1.00[TSI][hapmap]
rs6049734	1.00[EUR][1000 genomes]
rs6114740	1.00[EUR][1000 genomes]
rs61687961	1.00[EUR][1000 genomes]
rs73331334	1.00[EUR][1000 genomes]
rs73901840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902582	1.00[EUR][1000 genomes]
rs8118221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8122239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8122286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8125671	1.00[EUR][1000 genomes]
rs9679806	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24460200-24472600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
3	chr20:24462400-24472600	Weak transcription	Right Atrium	heart
4	chr20:24465000-24472800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:24467600-24472800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr20:24469400-24472800	Weak transcription	Fetal Intestine Large	intestine
7	chr20:24469800-24472400	Weak transcription	Brain Germinal Matrix	brain
8	chr20:24469800-24473600	Enhancers	Right Ventricle	heart
9	chr20:24470200-24473800	Weak transcription	Fetal Brain Male	brain
10	chr20:24470200-24473800	Enhancers	Fetal Heart	heart
11	chr20:24470400-24472600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr20:24470400-24472600	Weak transcription	Fetal Lung	lung
13	chr20:24470400-24473800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:24470400-24474200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr20:24470400-24474400	Weak transcription	Spleen	Spleen
16	chr20:24471000-24473400	Enhancers	Brain Hippocampus Middle	brain
17	chr20:24471000-24475000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr20:24471200-24474200	Enhancers	Brain Cingulate Gyrus	brain
19	chr20:24471200-24475600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr20:24471200-24493600	Weak transcription	Fetal Brain Female	brain
21	chr20:24471600-24472800	Weak transcription	Left Ventricle	heart
22	chr20:24471600-24473000	Enhancers	Brain Substantia Nigra	brain
23	chr20:24471600-24473000	Enhancers	Fetal Thymus	thymus
24	chr20:24471800-24472600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr20:24471800-24472800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr20:24471800-24472800	Weak transcription	Fetal Muscle Leg	muscle
27	chr20:24471800-24475200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr20:24472000-24472400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr20:24472000-24473200	Enhancers	Fetal Muscle Trunk	muscle
30	chr20:24472000-24473400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr20:24472000-24474200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr20:24472000-24474600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr20:24472000-24475000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr20:24472200-24473000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr20:24472200-24473200	Enhancers	Brain Angular Gyrus	brain
36	chr20:24472200-24473200	Enhancers	Brain Anterior Caudate	brain
37	chr20:24472200-24473600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr20:24472200-24474800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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