Variant report

Variant	rs6049734
Chromosome Location	chr20:24470827-24470828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24462787..24464329-chr20:24469582..24472376,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56123439	1.00[EUR][1000 genomes]
rs57891254	1.00[EUR][1000 genomes]
rs6036821	1.00[EUR][1000 genomes]
rs6049722	1.00[EUR][1000 genomes]
rs6114740	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61687961	1.00[EUR][1000 genomes]
rs73331334	1.00[EUR][1000 genomes]
rs73901840	1.00[EUR][1000 genomes]
rs73901841	1.00[EUR][1000 genomes]
rs73901844	1.00[EUR][1000 genomes]
rs73902582	1.00[EUR][1000 genomes]
rs8118221	1.00[EUR][1000 genomes]
rs8122239	1.00[EUR][1000 genomes]
rs8122286	1.00[EUR][1000 genomes]
rs8125671	1.00[EUR][1000 genomes]
rs9679806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3323949	chr20:24467852-24472250	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24459400-24471000	Weak transcription	Fetal Muscle Leg	muscle
2	chr20:24459400-24471800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr20:24459600-24472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr20:24460200-24471400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr20:24460200-24472600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
7	chr20:24462400-24472600	Weak transcription	Right Atrium	heart
8	chr20:24464600-24472000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr20:24465000-24472800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:24467600-24472800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr20:24469200-24471600	Weak transcription	Fetal Thymus	thymus
12	chr20:24469400-24472800	Weak transcription	Fetal Intestine Large	intestine
13	chr20:24469800-24472400	Weak transcription	Brain Germinal Matrix	brain
14	chr20:24469800-24473600	Enhancers	Right Ventricle	heart
15	chr20:24470000-24471200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr20:24470000-24471600	Enhancers	Left Ventricle	heart
17	chr20:24470200-24472000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr20:24470200-24472200	Weak transcription	Brain Anterior Caudate	brain
19	chr20:24470200-24473800	Weak transcription	Fetal Brain Male	brain
20	chr20:24470200-24473800	Enhancers	Fetal Heart	heart
21	chr20:24470400-24471000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr20:24470400-24471200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr20:24470400-24471600	Weak transcription	Brain Substantia Nigra	brain
24	chr20:24470400-24471800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr20:24470400-24472000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr20:24470400-24472000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr20:24470400-24472000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr20:24470400-24472200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr20:24470400-24472200	Weak transcription	Brain Angular Gyrus	brain
30	chr20:24470400-24472600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr20:24470400-24472600	Weak transcription	Fetal Lung	lung
32	chr20:24470400-24473800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr20:24470400-24474200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr20:24470400-24474400	Weak transcription	Spleen	Spleen
35	chr20:24470600-24471000	Weak transcription	Brain Hippocampus Middle	brain
36	chr20:24470600-24471200	Enhancers	Fetal Brain Female	brain
37	chr20:24470600-24471800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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