Variant report

Variant	rs9679806
Chromosome Location	chr20:24459621-24459622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24458098..24460302-chr20:24472208..24475161,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56123439	1.00[EUR][1000 genomes]
rs57891254	1.00[EUR][1000 genomes]
rs6036821	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6049722	1.00[EUR][1000 genomes]
rs6049726	1.00[TSI][hapmap]
rs6049734	1.00[EUR][1000 genomes]
rs6114655	1.00[MEX][hapmap]
rs6114740	1.00[EUR][1000 genomes]
rs6114796	1.00[MEX][hapmap]
rs61687961	1.00[EUR][1000 genomes]
rs7262956	1.00[MEX][hapmap]
rs7267732	1.00[MEX][hapmap]
rs73901840	1.00[EUR][1000 genomes]
rs73901841	1.00[EUR][1000 genomes]
rs73901844	1.00[EUR][1000 genomes]
rs73902582	1.00[EUR][1000 genomes]
rs8118221	1.00[EUR][1000 genomes]
rs8122239	1.00[EUR][1000 genomes]
rs8122286	1.00[EUR][1000 genomes]
rs8125671	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
2	chr20:24456200-24460200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:24457200-24460200	Enhancers	Brain Hippocampus Middle	brain
4	chr20:24457400-24459800	Enhancers	Brain Substantia Nigra	brain
5	chr20:24457400-24460400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:24457400-24462400	Enhancers	Fetal Heart	heart
7	chr20:24457600-24470600	Weak transcription	Fetal Brain Female	brain
8	chr20:24457800-24460000	Enhancers	Left Ventricle	heart
9	chr20:24458400-24460200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:24458600-24460400	Weak transcription	Aorta	Aorta
11	chr20:24458600-24460600	Enhancers	Right Atrium	heart
12	chr20:24458600-24460800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr20:24459000-24460200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr20:24459000-24460400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:24459000-24460400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:24459000-24461400	Enhancers	Fetal Brain Male	brain
17	chr20:24459200-24460000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr20:24459200-24460400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr20:24459200-24460800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:24459400-24460000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr20:24459400-24460200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr20:24459400-24471000	Weak transcription	Fetal Muscle Leg	muscle
23	chr20:24459400-24471800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr20:24459600-24460000	Weak transcription	Brain Anterior Caudate	brain
25	chr20:24459600-24460400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr20:24459600-24461200	Weak transcription	Brain Angular Gyrus	brain
27	chr20:24459600-24461400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr20:24459600-24465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr20:24459600-24472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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