Variant report

Variant	rs6037118
Chromosome Location	chr20:25419586-25419587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1609701	1.00[MEX][hapmap]
rs2039400	1.00[MEX][hapmap]
rs242131	1.00[MEX][hapmap]
rs2474771	1.00[AMR][1000 genomes]
rs2474772	1.00[MEX][hapmap]
rs2474778	1.00[AMR][1000 genomes]
rs2474779	1.00[AMR][1000 genomes]
rs2482904	1.00[AMR][1000 genomes]
rs2482905	1.00[AMR][1000 genomes]
rs2482914	1.00[AMR][1000 genomes]
rs2482924	1.00[AMR][1000 genomes]
rs2482926	1.00[AMR][1000 genomes]
rs2482939	1.00[MEX][hapmap]
rs2482944	1.00[AMR][1000 genomes]
rs2500398	1.00[AMR][1000 genomes]
rs2500415	1.00[AMR][1000 genomes]
rs2500421	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs2500422	1.00[AMR][1000 genomes]
rs2500426	1.00[AMR][1000 genomes]
rs2500427	1.00[AMR][1000 genomes]
rs407925	1.00[AMR][1000 genomes]
rs417446	1.00[MEX][hapmap]
rs496133	1.00[AMR][1000 genomes]
rs518336	1.00[MEX][hapmap]
rs6050627	1.00[MEX][hapmap]
rs6050711	1.00[MEX][hapmap]
rs6083882	1.00[MEX][hapmap]
rs6132844	1.00[MEX][hapmap]
rs913791	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063494	chr20:25067286-25468557	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1063016	chr20:25067286-25475629	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv1065101	chr20:25068046-25466542	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv544220	chr20:25068046-25466542	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv531480	chr20:25070067-25472684	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv585746	chr20:25071454-25470056	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv1062742	chr20:25071454-25475629	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv949389	chr20:25071454-25506582	Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv531481	chr20:25080583-25448944	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv949479	chr20:25096494-25467359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv1061109	chr20:25101715-25472685	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv544221	chr20:25101715-25472685	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv482647	chr20:25308912-25481982	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
14	nsv1056997	chr20:25316663-25492339	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv1061398	chr20:25370106-25444076	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv1059494	chr20:25377602-25441835	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
18	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25389000-25433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr20:25389400-25422800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr20:25389600-25426400	Weak transcription	NH-A	brain
4	chr20:25389600-25426600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr20:25389600-25432200	Weak transcription	Fetal Brain Male	brain
6	chr20:25389800-25432600	Weak transcription	Esophagus	oesophagus
7	chr20:25390000-25434800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr20:25390600-25426200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr20:25390600-25433400	Weak transcription	Brain Germinal Matrix	brain
10	chr20:25392200-25430800	Strong transcription	Dnd41	blood
11	chr20:25398800-25429800	Weak transcription	Hela-S3	cervix
12	chr20:25399800-25433600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr20:25399800-25434800	Weak transcription	NHLF	lung
14	chr20:25402800-25445200	Weak transcription	NHDF-Ad	bronchial
15	chr20:25405200-25420200	Strong transcription	HepG2	liver
16	chr20:25406000-25432600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr20:25406800-25426600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr20:25408400-25425000	Weak transcription	Osteobl	bone
19	chr20:25409000-25427000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr20:25409000-25432800	Weak transcription	K562	blood
21	chr20:25410800-25425200	Weak transcription	Fetal Intestine Large	intestine
22	chr20:25411800-25419600	Weak transcription	GM12878-XiMat	blood
23	chr20:25411800-25421600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr20:25412000-25426600	Weak transcription	Fetal Kidney	kidney
25	chr20:25412000-25429000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr20:25412200-25433600	Weak transcription	Spleen	Spleen
27	chr20:25412400-25432200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr20:25412600-25428400	Weak transcription	Fetal Brain Female	brain
29	chr20:25412600-25440200	Weak transcription	Placenta	Placenta
30	chr20:25413800-25430600	Weak transcription	Aorta	Aorta
31	chr20:25414200-25436000	Weak transcription	Primary T cells from cord blood	blood
32	chr20:25415400-25433600	Weak transcription	Pancreas	Pancrea
33	chr20:25415600-25425200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr20:25415600-25425200	Weak transcription	Fetal Thymus	thymus
35	chr20:25415600-25432200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr20:25415600-25432400	Weak transcription	Ovary	ovary
37	chr20:25415800-25419800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr20:25416000-25421600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr20:25416000-25425200	Weak transcription	Fetal Lung	lung
40	chr20:25416000-25425400	Weak transcription	Fetal Muscle Leg	muscle
41	chr20:25416000-25426800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr20:25416000-25429200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr20:25416200-25419800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr20:25416200-25421600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr20:25416200-25421600	Weak transcription	Fetal Stomach	stomach
46	chr20:25416400-25424600	Weak transcription	Fetal Intestine Small	intestine
47	chr20:25417000-25421600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr20:25418200-25421600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr20:25418200-25421800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr20:25418200-25421800	Weak transcription	HMEC	breast

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