Variant report

Variant	rs60375820
Chromosome Location	chr10:23009285-23009286
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16922642	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs67005858	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7071781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7922160	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004200-23011600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:23004400-23009600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:23004400-23009600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:23004400-23010600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:23004400-23011600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
11	chr10:23004600-23009400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:23004800-23009600	Weak transcription	GM12878-XiMat	blood
13	chr10:23008000-23009400	Weak transcription	K562	blood
14	chr10:23008600-23009600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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