Variant report
| Variant | rs67005858 |
|---|---|
| Chromosome Location | chr10:23041317-23041318 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:23030010..23032261-chr10:23040421..23043665,3 | K562 | blood: | |
| 2 | chr10:23016693..23018672-chr10:23040807..23043389,2 | K562 | blood: | |
| 3 | chr10:23039009..23041955-chr10:23046349..23048617,2 | MCF-7 | breast: | |
| 4 | chr10:23030110..23031615-chr10:23040326..23042788,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10508652 | 0.81[EUR][1000 genomes] |
| rs12240592 | 0.88[EUR][1000 genomes] |
| rs12242865 | 0.81[EUR][1000 genomes] |
| rs12245838 | 0.88[EUR][1000 genomes] |
| rs12259152 | 0.88[EUR][1000 genomes] |
| rs12261649 | 0.81[EUR][1000 genomes] |
| rs12262794 | 0.82[EUR][1000 genomes] |
| rs16922642 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs55839230 | 0.87[EUR][1000 genomes] |
| rs57618053 | 1.00[ASN][1000 genomes] |
| rs60375820 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs66475913 | 0.88[EUR][1000 genomes] |
| rs67134432 | 0.88[EUR][1000 genomes] |
| rs67524548 | 0.88[EUR][1000 genomes] |
| rs68180415 | 0.82[EUR][1000 genomes] |
| rs7071781 | 0.82[AMR][1000 genomes] |
| rs72810494 | 0.81[EUR][1000 genomes] |
| rs72810501 | 0.87[EUR][1000 genomes] |
| rs72812403 | 0.87[EUR][1000 genomes] |
| rs72812405 | 0.81[EUR][1000 genomes] |
| rs72816889 | 0.87[EUR][1000 genomes] |
| rs72816890 | 0.87[EUR][1000 genomes] |
| rs72816896 | 0.87[EUR][1000 genomes] |
| rs72816897 | 0.87[EUR][1000 genomes] |
| rs72816898 | 0.87[EUR][1000 genomes] |
| rs72816899 | 0.87[EUR][1000 genomes] |
| rs72816900 | 0.87[EUR][1000 genomes] |
| rs72818804 | 0.87[EUR][1000 genomes] |
| rs72818805 | 0.87[EUR][1000 genomes] |
| rs72818806 | 0.87[EUR][1000 genomes] |
| rs72818808 | 0.81[EUR][1000 genomes] |
| rs72818809 | 0.81[EUR][1000 genomes] |
| rs7902368 | 0.88[EUR][1000 genomes] |
| rs7913641 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831809 | chr10:22918101-23069676 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv550210 | chr10:23012096-23064702 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv550211 | chr10:23020350-23079385 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv550212 | chr10:23030282-23086690 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23039800-23042000 | Weak transcription | HUVEC | blood vessel |
| 2 | chr10:23040600-23043000 | Enhancers | Brain Substantia Nigra | brain |
| 3 | chr10:23041000-23041600 | Enhancers | GM12878-XiMat | blood |
| 4 | chr10:23041000-23043600 | Enhancers | Brain Hippocampus Middle | brain |
