Variant report

Variant	rs72812405
Chromosome Location	chr10:23080222-23080223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10466054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10508652	0.87[EUR][1000 genomes]
rs12240592	0.81[EUR][1000 genomes]
rs12242865	0.87[EUR][1000 genomes]
rs12244962	0.94[EUR][1000 genomes]
rs12245838	0.81[EUR][1000 genomes]
rs12259152	0.81[EUR][1000 genomes]
rs12261649	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262923	0.94[EUR][1000 genomes]
rs12265739	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28648575	0.94[EUR][1000 genomes]
rs55839230	0.93[EUR][1000 genomes]
rs56098139	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66475913	0.81[EUR][1000 genomes]
rs67005858	0.81[EUR][1000 genomes]
rs67134432	0.81[EUR][1000 genomes]
rs67524548	0.81[EUR][1000 genomes]
rs72810494	0.87[EUR][1000 genomes]
rs72810501	0.93[EUR][1000 genomes]
rs72812403	0.93[EUR][1000 genomes]
rs72812407	0.94[EUR][1000 genomes]
rs72812415	0.94[EUR][1000 genomes]
rs72812425	0.94[EUR][1000 genomes]
rs72812430	0.94[EUR][1000 genomes]
rs72816867	0.80[EUR][1000 genomes]
rs72816870	0.80[EUR][1000 genomes]
rs72816876	0.80[EUR][1000 genomes]
rs72816881	0.80[EUR][1000 genomes]
rs72816884	0.80[EUR][1000 genomes]
rs72816885	0.80[EUR][1000 genomes]
rs72816887	0.80[EUR][1000 genomes]
rs72816889	0.93[EUR][1000 genomes]
rs72816890	0.93[EUR][1000 genomes]
rs72816895	0.81[EUR][1000 genomes]
rs72816896	0.93[EUR][1000 genomes]
rs72816897	0.93[EUR][1000 genomes]
rs72816898	0.93[EUR][1000 genomes]
rs72816899	0.93[EUR][1000 genomes]
rs72816900	0.93[EUR][1000 genomes]
rs72818804	0.93[EUR][1000 genomes]
rs72818805	0.93[EUR][1000 genomes]
rs72818806	0.93[EUR][1000 genomes]
rs72818808	0.87[EUR][1000 genomes]
rs72818809	0.87[EUR][1000 genomes]
rs72818811	0.80[EUR][1000 genomes]
rs7902368	0.81[EUR][1000 genomes]
rs7913641	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23069800-23080600	Weak transcription	Brain Hippocampus Middle	brain

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