Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10466054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10508652	0.81[EUR][1000 genomes]
rs12242865	0.81[EUR][1000 genomes]
rs12244962	1.00[EUR][1000 genomes]
rs12261649	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28648575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839230	0.87[EUR][1000 genomes]
rs72810494	0.81[EUR][1000 genomes]
rs72810501	0.87[EUR][1000 genomes]
rs72812403	0.87[EUR][1000 genomes]
rs72812405	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72812407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812425	1.00[EUR][1000 genomes]
rs72812430	1.00[EUR][1000 genomes]
rs72816889	0.87[EUR][1000 genomes]
rs72816890	0.87[EUR][1000 genomes]
rs72816896	0.87[EUR][1000 genomes]
rs72816897	0.87[EUR][1000 genomes]
rs72816898	0.87[EUR][1000 genomes]
rs72816899	0.87[EUR][1000 genomes]
rs72816900	0.87[EUR][1000 genomes]
rs72818804	0.87[EUR][1000 genomes]
rs72818805	0.87[EUR][1000 genomes]
rs72818806	0.87[EUR][1000 genomes]
rs72818808	0.81[EUR][1000 genomes]
rs72818809	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
2	chr10:23115000-23120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:23115000-23120400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:23115200-23120400	Weak transcription	Esophagus	oesophagus
5	chr10:23116200-23120400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:23117200-23118600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:23117400-23118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:23117400-23119000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:23117600-23118400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:23118000-23120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:23118200-23118400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:23118200-23118600	Enhancers	HSMM	muscle

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