Variant report
Variant | rs12262923 |
---|---|
Chromosome Location | chr10:23084944-23084945 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10466054 | 1.00[EUR][1000 genomes] |
rs10508652 | 0.81[EUR][1000 genomes] |
rs12242865 | 0.81[EUR][1000 genomes] |
rs12244962 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12261649 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12265739 | 1.00[EUR][1000 genomes] |
rs28648575 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55839230 | 0.87[EUR][1000 genomes] |
rs56098139 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72810494 | 0.81[EUR][1000 genomes] |
rs72810501 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72812403 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72812405 | 0.94[EUR][1000 genomes] |
rs72812407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72812415 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72812425 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72812430 | 1.00[EUR][1000 genomes] |
rs72816889 | 0.87[EUR][1000 genomes] |
rs72816890 | 0.87[EUR][1000 genomes] |
rs72816896 | 0.87[EUR][1000 genomes] |
rs72816897 | 0.87[EUR][1000 genomes] |
rs72816898 | 0.87[EUR][1000 genomes] |
rs72816899 | 0.87[EUR][1000 genomes] |
rs72816900 | 0.87[EUR][1000 genomes] |
rs72818804 | 0.87[EUR][1000 genomes] |
rs72818805 | 0.87[EUR][1000 genomes] |
rs72818806 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72818808 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs72818809 | 0.81[EUR][1000 genomes] |
rs72818811 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv550212 | chr10:23030282-23086690 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv894960 | chr10:23049139-23113841 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv894961 | chr10:23049139-23128475 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv466833 | chr10:23050683-23110797 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv894962 | chr10:23050683-23113841 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv894963 | chr10:23050683-23121820 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv894964 | chr10:23050683-23128475 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
8 | nsv894965 | chr10:23071128-23113841 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:23081200-23092000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr10:23081200-23093000 | Weak transcription | Brain Hippocampus Middle | brain |