Variant report

Variant	rs72812430
Chromosome Location	chr10:23131625-23131626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10466054	1.00[EUR][1000 genomes]
rs10508652	0.81[EUR][1000 genomes]
rs12242865	0.81[EUR][1000 genomes]
rs12244962	1.00[EUR][1000 genomes]
rs12261649	0.94[EUR][1000 genomes]
rs12262923	1.00[EUR][1000 genomes]
rs12265739	1.00[EUR][1000 genomes]
rs28648575	1.00[EUR][1000 genomes]
rs55839230	0.87[EUR][1000 genomes]
rs56098139	1.00[EUR][1000 genomes]
rs72810494	0.81[EUR][1000 genomes]
rs72810501	0.87[EUR][1000 genomes]
rs72812403	0.87[EUR][1000 genomes]
rs72812405	0.94[EUR][1000 genomes]
rs72812407	1.00[EUR][1000 genomes]
rs72812415	1.00[EUR][1000 genomes]
rs72812425	1.00[EUR][1000 genomes]
rs72816889	0.87[EUR][1000 genomes]
rs72816890	0.87[EUR][1000 genomes]
rs72816896	0.87[EUR][1000 genomes]
rs72816897	0.87[EUR][1000 genomes]
rs72816898	0.87[EUR][1000 genomes]
rs72816899	0.87[EUR][1000 genomes]
rs72816900	0.87[EUR][1000 genomes]
rs72818804	0.87[EUR][1000 genomes]
rs72818805	0.87[EUR][1000 genomes]
rs72818806	0.87[EUR][1000 genomes]
rs72818808	0.81[EUR][1000 genomes]
rs72818809	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
2	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23129000-23133800	Weak transcription	Aorta	Aorta
5	chr10:23131000-23131800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:23131200-23131800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:23131400-23131800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:23131400-23137000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:23131600-23133200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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