Variant report

Variant	rs55839230
Chromosome Location	chr10:23045729-23045730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22989774..22994119-chr10:23044705..23049476,4	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10466054	0.87[EUR][1000 genomes]
rs10508652	0.93[EUR][1000 genomes]
rs12240592	0.87[EUR][1000 genomes]
rs12242865	0.93[EUR][1000 genomes]
rs12244962	0.87[EUR][1000 genomes]
rs12245838	0.87[EUR][1000 genomes]
rs12259152	0.87[EUR][1000 genomes]
rs12261649	0.93[EUR][1000 genomes]
rs12262794	0.82[EUR][1000 genomes]
rs12262923	0.87[EUR][1000 genomes]
rs12265739	0.87[EUR][1000 genomes]
rs28648575	0.87[EUR][1000 genomes]
rs55896828	1.00[AMR][1000 genomes]
rs56098139	0.87[EUR][1000 genomes]
rs66475913	0.87[EUR][1000 genomes]
rs67005858	0.87[EUR][1000 genomes]
rs67134432	0.87[EUR][1000 genomes]
rs67524548	0.87[EUR][1000 genomes]
rs68180415	0.82[EUR][1000 genomes]
rs72810494	0.93[EUR][1000 genomes]
rs72810501	1.00[EUR][1000 genomes]
rs72812403	1.00[EUR][1000 genomes]
rs72812405	0.93[EUR][1000 genomes]
rs72812407	0.87[EUR][1000 genomes]
rs72812415	0.87[EUR][1000 genomes]
rs72812425	0.87[EUR][1000 genomes]
rs72812430	0.87[EUR][1000 genomes]
rs72816813	1.00[AMR][1000 genomes]
rs72816814	1.00[AMR][1000 genomes]
rs72816817	1.00[AMR][1000 genomes]
rs72816821	1.00[AMR][1000 genomes]
rs72816823	1.00[AMR][1000 genomes]
rs72816824	1.00[AMR][1000 genomes]
rs72816828	1.00[AMR][1000 genomes]
rs72816829	1.00[AMR][1000 genomes]
rs72816831	1.00[AMR][1000 genomes]
rs72816836	1.00[AMR][1000 genomes]
rs72816839	1.00[AMR][1000 genomes]
rs72816840	1.00[AMR][1000 genomes]
rs72816843	1.00[AMR][1000 genomes]
rs72816845	1.00[AMR][1000 genomes]
rs72816849	1.00[AMR][1000 genomes]
rs72816854	1.00[AMR][1000 genomes]
rs72816861	1.00[AMR][1000 genomes]
rs72816867	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816870	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816876	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816881	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816884	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816885	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816887	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816895	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72816896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818806	1.00[EUR][1000 genomes]
rs72818808	0.93[EUR][1000 genomes]
rs72818809	0.93[EUR][1000 genomes]
rs72818811	0.86[EUR][1000 genomes]
rs7902368	0.87[EUR][1000 genomes]
rs7913641	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23043000-23048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:23043400-23047000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:23043400-23050200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:23043600-23047200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:23045600-23046000	Enhancers	Brain Angular Gyrus	brain
6	chr10:23045600-23046000	Enhancers	Brain Substantia Nigra	brain

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