Variant report

Variant	rs72816885
Chromosome Location	chr10:23025200-23025201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23016705..23019113-chr10:23023056..23025280,2	K562	blood:
2	chr10:23022751..23025731-chr10:23344212..23345914,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10508652	0.80[EUR][1000 genomes]
rs12242865	0.80[EUR][1000 genomes]
rs12261649	0.80[EUR][1000 genomes]
rs55839230	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55896828	1.00[AMR][1000 genomes]
rs72810494	0.80[EUR][1000 genomes]
rs72810501	0.86[EUR][1000 genomes]
rs72812403	0.86[EUR][1000 genomes]
rs72812405	0.80[EUR][1000 genomes]
rs72816807	1.00[AMR][1000 genomes]
rs72816813	1.00[AMR][1000 genomes]
rs72816814	1.00[AMR][1000 genomes]
rs72816817	1.00[AMR][1000 genomes]
rs72816821	1.00[AMR][1000 genomes]
rs72816823	1.00[AMR][1000 genomes]
rs72816824	1.00[AMR][1000 genomes]
rs72816828	1.00[AMR][1000 genomes]
rs72816829	1.00[AMR][1000 genomes]
rs72816831	1.00[AMR][1000 genomes]
rs72816836	1.00[AMR][1000 genomes]
rs72816839	1.00[AMR][1000 genomes]
rs72816840	1.00[AMR][1000 genomes]
rs72816843	1.00[AMR][1000 genomes]
rs72816845	1.00[AMR][1000 genomes]
rs72816849	1.00[AMR][1000 genomes]
rs72816854	1.00[AMR][1000 genomes]
rs72816861	1.00[AMR][1000 genomes]
rs72816867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816889	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816890	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72816896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72816900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72818804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72818805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72818806	0.86[EUR][1000 genomes]
rs72818808	0.80[EUR][1000 genomes]
rs72818809	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23016400-23027600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23020000-23029800	Weak transcription	Stomach Mucosa	stomach
3	chr10:23024600-23026400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:23024600-23027000	Enhancers	K562	blood
5	chr10:23024800-23025600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:23025200-23025400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links