Variant report

Variant	rs72816821
Chromosome Location	chr10:22869157-22869158
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22866106..22869303-chr10:23343034..23346067,3	K562	blood:
2	chr10:22867803..22869789-chr10:23344179..23345992,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55839230	1.00[AMR][1000 genomes]
rs55896828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72814844	1.00[AMR][1000 genomes]
rs72814850	1.00[AMR][1000 genomes]
rs72816807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816822	1.00[EUR][1000 genomes]
rs72816823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72816839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72816854	1.00[AMR][1000 genomes]
rs72816861	1.00[AMR][1000 genomes]
rs72816867	1.00[AMR][1000 genomes]
rs72816870	1.00[AMR][1000 genomes]
rs72816876	1.00[AMR][1000 genomes]
rs72816881	1.00[AMR][1000 genomes]
rs72816884	1.00[AMR][1000 genomes]
rs72816885	1.00[AMR][1000 genomes]
rs72816887	1.00[AMR][1000 genomes]
rs72816889	1.00[AMR][1000 genomes]
rs72816890	1.00[AMR][1000 genomes]
rs72816895	1.00[AMR][1000 genomes]
rs72816896	1.00[AMR][1000 genomes]
rs72816897	1.00[AMR][1000 genomes]
rs72816898	1.00[AMR][1000 genomes]
rs72816899	1.00[AMR][1000 genomes]
rs72816900	1.00[AMR][1000 genomes]
rs72818804	1.00[AMR][1000 genomes]
rs72818805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3314063	chr10:22868607-22869667	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3314074	chr10:22868607-22869667	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:22825600-22888000	Weak transcription	HMEC	breast
3	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
5	chr10:22844200-22876200	Weak transcription	Ovary	ovary
6	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
15	chr10:22853800-22876200	Weak transcription	Osteobl	bone
16	chr10:22854000-22869600	Weak transcription	Pancreas	Pancrea
17	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:22854200-22887400	Weak transcription	NHDF-Ad	bronchial
19	chr10:22854200-22887400	Weak transcription	NHEK	skin
20	chr10:22855200-22871000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:22855600-22882600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:22855800-22879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:22855800-22881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:22856000-22870000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:22856600-22869800	Weak transcription	NH-A	brain
26	chr10:22856600-22899200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:22856800-22888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:22857000-22888200	Weak transcription	Small Intestine	intestine
29	chr10:22857200-22879000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:22857400-22872200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:22857600-22869600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:22858200-22904000	Weak transcription	Colonic Mucosa	Colon
33	chr10:22859000-22871600	Strong transcription	K562	blood
34	chr10:22860000-22869600	Weak transcription	Psoas Muscle	Psoas
35	chr10:22860400-22871000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:22860400-22882200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:22860600-22871200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:22860600-22878000	Weak transcription	Fetal Brain Male	brain
39	chr10:22861000-22871000	Strong transcription	Fetal Stomach	stomach
40	chr10:22861400-22869600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:22862200-22869400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:22862200-22870000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:22862200-22876800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:22862200-22880400	Weak transcription	Fetal Kidney	kidney
45	chr10:22862200-22885800	Weak transcription	NHLF	lung
46	chr10:22862400-22869600	Weak transcription	Left Ventricle	heart
47	chr10:22862400-22879000	Weak transcription	Fetal Lung	lung
48	chr10:22862400-22886000	Weak transcription	HSMMtube	muscle
49	chr10:22862400-22887400	Weak transcription	A549	lung
50	chr10:22862400-22902000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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