The 2.0 version of rSNPBase

Variant report

Variant rs72816828
Chromosome Location chr10:22870268-22870269
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:22825600-22888000 Weak transcription HMEC breast
2 chr10:22829000-22887400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr10:22844000-22876600 Weak transcription Right Ventricle heart
4 chr10:22844200-22876200 Weak transcription Ovary ovary
5 chr10:22844200-22877200 Weak transcription Colon Smooth Muscle Colon
6 chr10:22844200-22904800 Weak transcription Rectal Smooth Muscle rectum
7 chr10:22849600-22879000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr10:22850400-22878800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr10:22850400-22882000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr10:22850400-22882600 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr10:22851800-22874800 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr10:22853600-22878600 Weak transcription HUVEC blood vessel
13 chr10:22853800-22876200 Weak transcription Osteobl bone
14 chr10:22854000-22879000 Weak transcription Muscle Satellite Cultured Cells --
15 chr10:22854200-22887400 Weak transcription NHDF-Ad bronchial
16 chr10:22854200-22887400 Weak transcription NHEK skin
17 chr10:22855200-22871000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr10:22855600-22882600 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr10:22855800-22879800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr10:22855800-22881400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr10:22856600-22899200 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr10:22856800-22888200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr10:22857000-22888200 Weak transcription Small Intestine intestine
24 chr10:22857200-22879000 Weak transcription H9 Cell Line embryonic stem cell
25 chr10:22857400-22872200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr10:22858200-22904000 Weak transcription Colonic Mucosa Colon
27 chr10:22859000-22871600 Strong transcription K562 blood
28 chr10:22860400-22871000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
29 chr10:22860400-22882200 Strong transcription Primary T regulatory cells fromperipheralblood blood
30 chr10:22860600-22871200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr10:22860600-22878000 Weak transcription Fetal Brain Male brain
32 chr10:22861000-22871000 Strong transcription Fetal Stomach stomach
33 chr10:22862200-22876800 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr10:22862200-22880400 Weak transcription Fetal Kidney kidney
35 chr10:22862200-22885800 Weak transcription NHLF lung
36 chr10:22862400-22879000 Weak transcription Fetal Lung lung
37 chr10:22862400-22886000 Weak transcription HSMMtube muscle
38 chr10:22862400-22887400 Weak transcription A549 lung
39 chr10:22862400-22902000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
40 chr10:22862600-22876200 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr10:22862600-22876800 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr10:22863200-22875000 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr10:22863200-22876200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr10:22863800-22874000 Strong transcription Fetal Thymus thymus
45 chr10:22863800-22874200 Strong transcription Primary B cells from peripheral blood blood
46 chr10:22863800-22874800 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr10:22863800-22886400 Strong transcription Primary hematopoietic stem cells short term culture blood
48 chr10:22864000-22874200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
49 chr10:22864000-22874600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr10:22864000-22882400 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015