Variant report

Variant	rs12242865
Chromosome Location	chr10:23054535-23054536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23052115..23054835-chr10:23068399..23071194,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10466054	0.81[EUR][1000 genomes]
rs10508652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240592	0.94[EUR][1000 genomes]
rs12244962	0.81[EUR][1000 genomes]
rs12245838	0.94[EUR][1000 genomes]
rs12255596	1.00[ASN][1000 genomes]
rs12259152	0.94[EUR][1000 genomes]
rs12260525	1.00[ASN][1000 genomes]
rs12261649	0.87[EUR][1000 genomes]
rs12262794	0.88[EUR][1000 genomes]
rs12262923	0.81[EUR][1000 genomes]
rs12265739	0.81[EUR][1000 genomes]
rs16922685	1.00[ASN][1000 genomes]
rs28648575	0.81[EUR][1000 genomes]
rs55839230	0.93[EUR][1000 genomes]
rs56098139	0.81[EUR][1000 genomes]
rs66475913	0.94[EUR][1000 genomes]
rs67005858	0.81[EUR][1000 genomes]
rs67134432	0.94[EUR][1000 genomes]
rs67524548	0.94[EUR][1000 genomes]
rs68180415	0.88[EUR][1000 genomes]
rs72810494	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810501	0.93[EUR][1000 genomes]
rs72812403	0.93[EUR][1000 genomes]
rs72812405	0.87[EUR][1000 genomes]
rs72812407	0.81[EUR][1000 genomes]
rs72812415	0.81[EUR][1000 genomes]
rs72812425	0.81[EUR][1000 genomes]
rs72812430	0.81[EUR][1000 genomes]
rs72816867	0.80[EUR][1000 genomes]
rs72816870	0.80[EUR][1000 genomes]
rs72816876	0.80[EUR][1000 genomes]
rs72816881	0.80[EUR][1000 genomes]
rs72816884	0.80[EUR][1000 genomes]
rs72816885	0.80[EUR][1000 genomes]
rs72816887	0.80[EUR][1000 genomes]
rs72816889	0.93[EUR][1000 genomes]
rs72816890	0.93[EUR][1000 genomes]
rs72816895	0.81[EUR][1000 genomes]
rs72816896	0.93[EUR][1000 genomes]
rs72816897	0.93[EUR][1000 genomes]
rs72816898	0.93[EUR][1000 genomes]
rs72816899	0.93[EUR][1000 genomes]
rs72816900	0.93[EUR][1000 genomes]
rs72818804	0.93[EUR][1000 genomes]
rs72818805	0.93[EUR][1000 genomes]
rs72818806	0.93[EUR][1000 genomes]
rs72818808	1.00[EUR][1000 genomes]
rs72818809	1.00[EUR][1000 genomes]
rs72818811	0.93[EUR][1000 genomes]
rs73600529	1.00[ASN][1000 genomes]
rs73600530	1.00[ASN][1000 genomes]
rs7902368	0.94[EUR][1000 genomes]
rs7913641	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23052000-23057600	Enhancers	Brain Substantia Nigra	brain
2	chr10:23053000-23057000	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:23053400-23056400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:23053400-23057400	Enhancers	Colon Smooth Muscle	Colon
5	chr10:23053600-23054800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:23053600-23056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:23054000-23054800	Enhancers	GM12878-XiMat	blood
8	chr10:23054000-23055200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:23054000-23055800	Weak transcription	Brain Anterior Caudate	brain
10	chr10:23054000-23055800	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:23054000-23055800	Weak transcription	Fetal Stomach	stomach
12	chr10:23054000-23056600	Weak transcription	Aorta	Aorta
13	chr10:23054000-23057600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:23054200-23055200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:23054200-23055800	Enhancers	Primary B cells from cord blood	blood
16	chr10:23054200-23055800	Weak transcription	Adipose Nuclei	Adipose
17	chr10:23054200-23056600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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