Variant report

Variant	rs12240592
Chromosome Location	chr10:23066280-23066281
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10508652	0.94[EUR][1000 genomes]
rs12242865	0.94[EUR][1000 genomes]
rs12245838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12259152	1.00[EUR][1000 genomes]
rs12261649	0.81[EUR][1000 genomes]
rs12262794	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55839230	0.87[EUR][1000 genomes]
rs66475913	1.00[EUR][1000 genomes]
rs67005858	0.88[EUR][1000 genomes]
rs67134432	1.00[EUR][1000 genomes]
rs67524548	1.00[EUR][1000 genomes]
rs68180415	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72810494	0.94[EUR][1000 genomes]
rs72810501	0.87[EUR][1000 genomes]
rs72812403	0.87[EUR][1000 genomes]
rs72812405	0.81[EUR][1000 genomes]
rs72816889	0.87[EUR][1000 genomes]
rs72816890	0.87[EUR][1000 genomes]
rs72816896	0.87[EUR][1000 genomes]
rs72816897	0.87[EUR][1000 genomes]
rs72816898	0.87[EUR][1000 genomes]
rs72816899	0.87[EUR][1000 genomes]
rs72816900	0.87[EUR][1000 genomes]
rs72818804	0.87[EUR][1000 genomes]
rs72818805	0.87[EUR][1000 genomes]
rs72818806	0.87[EUR][1000 genomes]
rs72818808	0.94[EUR][1000 genomes]
rs72818809	0.94[EUR][1000 genomes]
rs72818811	0.87[EUR][1000 genomes]
rs7902368	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913641	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23064400-23069200	Weak transcription	Brain Germinal Matrix	brain

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