The 2.0 version of rSNPBase

Variant report

Variant rs60401394
Chromosome Location chr1:77809250-77809251
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77788800-77813000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
2 chr1:77789000-77813000 Weak transcription NHLF lung
3 chr1:77789000-77831200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:77795000-77836400 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr1:77800400-77812800 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr1:77800800-77813400 Weak transcription Brain Cingulate Gyrus brain
7 chr1:77801000-77825800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr1:77801400-77809800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:77803400-77839200 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr1:77803600-77813400 Weak transcription Brain Angular Gyrus brain
11 chr1:77804200-77812400 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr1:77806200-77811000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:77806200-77812800 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr1:77807000-77809600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:77807000-77813000 Weak transcription Brain Substantia Nigra brain
16 chr1:77807600-77813000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:77808000-77809400 Enhancers A549 lung
18 chr1:77808600-77809400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:77808800-77812800 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr1:77808800-77813600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:77809000-77812800 Strong transcription NHDF-Ad bronchial
22 chr1:77809000-77819200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:77809200-77809400 Genic enhancers Primary T cells from cord blood blood
24 chr1:77809200-77809400 Enhancers Primary mononuclear cells fromperipheralblood Blood
25 chr1:77809200-77812000 Strong transcription HSMM muscle
26 chr1:77809200-77813000 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:77809200-77814400 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015