Variant report

Variant	rs6040202
Chromosome Location	chr20:10835497-10835498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57856753	0.83[AMR][1000 genomes]
rs6032972	0.83[AMR][1000 genomes]
rs6032973	0.83[AMR][1000 genomes]
rs6032981	0.83[AMR][1000 genomes]
rs6040204	0.83[AMR][1000 genomes]
rs6040205	0.83[AMR][1000 genomes]
rs6040210	0.83[AMR][1000 genomes]
rs6040212	0.83[AMR][1000 genomes]
rs73896405	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10824400-10838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:10830000-10838000	Weak transcription	Right Atrium	heart
3	chr20:10830000-10839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:10830000-10845000	Weak transcription	Spleen	Spleen
5	chr20:10830200-10835600	Weak transcription	Stomach Mucosa	stomach
6	chr20:10830200-10843600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr20:10830200-10843800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr20:10830400-10835600	Weak transcription	HMEC	breast
9	chr20:10830400-10835600	Weak transcription	NHEK	skin
10	chr20:10830400-10838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:10832600-10837600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:10833400-10836400	Weak transcription	Fetal Intestine Large	intestine
13	chr20:10834000-10836200	Enhancers	NHDF-Ad	bronchial
14	chr20:10834000-10838600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr20:10834200-10835600	Enhancers	Fetal Muscle Leg	muscle
16	chr20:10834600-10838000	Weak transcription	Esophagus	oesophagus
17	chr20:10834600-10838200	Weak transcription	Lung	lung
18	chr20:10834800-10838200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr20:10835200-10835600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr20:10835200-10836000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr20:10835200-10836000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr20:10835200-10836200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr20:10835200-10836600	Enhancers	A549	lung
24	chr20:10835400-10835600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr20:10835400-10835600	Enhancers	Pancreas	Pancrea
26	chr20:10835400-10835800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr20:10835400-10835800	Enhancers	Aorta	Aorta
28	chr20:10835400-10835800	Enhancers	HUVEC	blood vessel
29	chr20:10835400-10837400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr20:10835400-10838600	Enhancers	Osteobl	bone
31	chr20:10835400-10843600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links