The 2.0 version of rSNPBase

Variant report

Variant rs57856753
Chromosome Location chr20:10841561-10841562
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:10830000-10845000 Weak transcription Spleen Spleen
2 chr20:10830200-10843600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr20:10830200-10843800 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr20:10835400-10843600 Weak transcription Left Ventricle heart
5 chr20:10835800-10843600 Weak transcription Aorta Aorta
6 chr20:10836000-10841600 Weak transcription NHEK skin
7 chr20:10836000-10843800 Weak transcription HMEC breast
8 chr20:10838200-10844800 Weak transcription Colonic Mucosa Colon
9 chr20:10838400-10841600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr20:10838400-10842200 Weak transcription Duodenum Mucosa Duodenum
11 chr20:10838400-10842200 Weak transcription Stomach Mucosa stomach
12 chr20:10838400-10842600 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr20:10838400-10843600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr20:10838400-10843600 Weak transcription Esophagus oesophagus
15 chr20:10838400-10843600 Weak transcription Pancreas Pancrea
16 chr20:10838400-10843600 Weak transcription Right Atrium heart
17 chr20:10838400-10843800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr20:10838400-10843800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr20:10838400-10843800 Weak transcription Adipose Nuclei Adipose
20 chr20:10838400-10843800 Weak transcription NHLF lung
21 chr20:10838400-10845000 Weak transcription Lung lung
22 chr20:10838600-10841600 Weak transcription Muscle Satellite Cultured Cells --
23 chr20:10838600-10841800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr20:10838600-10842000 Weak transcription HepG2 liver
25 chr20:10838600-10842200 Weak transcription Osteobl bone
26 chr20:10838600-10843600 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr20:10838600-10844000 Weak transcription Fetal Muscle Leg muscle
28 chr20:10838600-10844600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr20:10838800-10842000 Weak transcription HUVEC blood vessel
30 chr20:10838800-10842200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr20:10838800-10842200 Weak transcription Colon Smooth Muscle Colon
32 chr20:10838800-10842200 Weak transcription Fetal Intestine Small intestine
33 chr20:10839000-10841800 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr20:10839400-10844800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr20:10840200-10841800 Enhancers A549 lung
36 chr20:10840600-10842800 Enhancers Primary neutrophils fromperipheralblood blood
37 chr20:10841000-10842000 Enhancers Monocytes-CD14+_RO01746 blood
38 chr20:10841000-10842600 Enhancers Primary monocytes fromperipheralblood blood
39 chr20:10841000-10843600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr20:10841000-10844600 Enhancers Hela-S3 cervix
41 chr20:10841200-10841600 Weak transcription Primary B cells from cord blood blood
42 chr20:10841200-10844400 Enhancers Rectal Mucosa Donor 31 rectum
43 chr20:10841400-10843000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015