Variant report

Variant	rs6040230
Chromosome Location	chr20:10887305-10887306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55923598	0.83[AMR][1000 genomes]
rs57856753	0.83[AMR][1000 genomes]
rs6032972	0.83[AMR][1000 genomes]
rs6032973	0.83[AMR][1000 genomes]
rs6032981	0.83[AMR][1000 genomes]
rs6032983	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6040204	0.83[AMR][1000 genomes]
rs6040205	0.83[AMR][1000 genomes]
rs6040210	0.83[AMR][1000 genomes]
rs6040212	0.83[AMR][1000 genomes]
rs7267919	0.83[AMR][1000 genomes]
rs73896405	0.83[AMR][1000 genomes]
rs73896414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73896415	1.00[AMR][1000 genomes]
rs73896416	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73896417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
2	chr20:10883800-10889800	Weak transcription	Fetal Kidney	kidney
3	chr20:10883800-10891200	Weak transcription	Aorta	Aorta
4	chr20:10884200-10891200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr20:10885600-10887800	Enhancers	Fetal Stomach	stomach
6	chr20:10886000-10887400	Enhancers	Fetal Lung	lung
7	chr20:10886600-10899000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr20:10887200-10887800	Enhancers	NHDF-Ad	bronchial
9	chr20:10887200-10891200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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