Variant report

Variant	rs7267919
Chromosome Location	chr20:10884900-10884901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55923598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6032983	0.83[AMR][1000 genomes]
rs6040230	0.83[AMR][1000 genomes]
rs73896403	0.81[AFR][1000 genomes]
rs73896414	0.83[AMR][1000 genomes]
rs73896415	0.83[AMR][1000 genomes]
rs73896416	0.83[AMR][1000 genomes]
rs73896417	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
2	chr20:10882600-10885000	Enhancers	HSMMtube	muscle
3	chr20:10883800-10889800	Weak transcription	Fetal Kidney	kidney
4	chr20:10883800-10891200	Weak transcription	Aorta	Aorta
5	chr20:10884200-10886000	Weak transcription	Fetal Lung	lung
6	chr20:10884200-10891200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr20:10884600-10885600	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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