Variant report

Variant	rs73896403
Chromosome Location	chr20:10838428-10838429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16991987	1.00[AMR][1000 genomes]
rs55923598	0.90[AFR][1000 genomes]
rs56348465	1.00[AMR][1000 genomes]
rs58036995	1.00[AMR][1000 genomes]
rs58565167	1.00[AMR][1000 genomes]
rs6032968	1.00[AMR][1000 genomes]
rs6040190	1.00[AMR][1000 genomes]
rs6040193	1.00[AMR][1000 genomes]
rs7261930	1.00[AMR][1000 genomes]
rs7265005	1.00[AMR][1000 genomes]
rs7267919	0.81[AFR][1000 genomes]
rs7274741	1.00[AMR][1000 genomes]
rs73898834	1.00[AMR][1000 genomes]
rs73898836	1.00[AMR][1000 genomes]
rs73898841	1.00[AMR][1000 genomes]
rs73898852	1.00[AMR][1000 genomes]
rs73898854	1.00[AMR][1000 genomes]
rs73898858	1.00[AMR][1000 genomes]
rs73898860	1.00[AMR][1000 genomes]
rs73898863	1.00[AMR][1000 genomes]
rs73898864	1.00[AMR][1000 genomes]
rs73898866	1.00[AMR][1000 genomes]
rs73898870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10830000-10839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:10830000-10845000	Weak transcription	Spleen	Spleen
3	chr20:10830200-10843600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr20:10830200-10843800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr20:10834000-10838600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:10835400-10838600	Enhancers	Osteobl	bone
7	chr20:10835400-10843600	Weak transcription	Left Ventricle	heart
8	chr20:10835800-10843600	Weak transcription	Aorta	Aorta
9	chr20:10836000-10841400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr20:10836000-10841600	Weak transcription	NHEK	skin
11	chr20:10836000-10843800	Weak transcription	HMEC	breast
12	chr20:10836400-10838600	Enhancers	HepG2	liver
13	chr20:10836600-10839000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr20:10836600-10839000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr20:10836600-10839200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr20:10836800-10838800	Enhancers	HUVEC	blood vessel
17	chr20:10837000-10838800	Enhancers	Colon Smooth Muscle	Colon
18	chr20:10837000-10838800	Enhancers	Fetal Intestine Small	intestine
19	chr20:10837400-10838600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr20:10837400-10839000	Enhancers	Fetal Intestine Large	intestine
21	chr20:10837400-10839400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr20:10837600-10838600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr20:10837800-10838600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr20:10837800-10838600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr20:10837800-10838800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr20:10838000-10838600	Enhancers	Fetal Muscle Leg	muscle
27	chr20:10838000-10839400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr20:10838200-10838800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr20:10838200-10844800	Weak transcription	Colonic Mucosa	Colon
30	chr20:10838400-10839000	Enhancers	Hela-S3	cervix
31	chr20:10838400-10839000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr20:10838400-10839200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr20:10838400-10839200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr20:10838400-10839800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr20:10838400-10839800	Enhancers	A549	lung
36	chr20:10838400-10840000	Weak transcription	Gastric	stomach
37	chr20:10838400-10841000	Weak transcription	Primary B cells from cord blood	blood
38	chr20:10838400-10841600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr20:10838400-10842200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr20:10838400-10842200	Weak transcription	Stomach Mucosa	stomach
41	chr20:10838400-10842600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr20:10838400-10843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr20:10838400-10843600	Weak transcription	Esophagus	oesophagus
44	chr20:10838400-10843600	Weak transcription	Pancreas	Pancrea
45	chr20:10838400-10843600	Weak transcription	Right Atrium	heart
46	chr20:10838400-10843800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr20:10838400-10843800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr20:10838400-10843800	Weak transcription	Adipose Nuclei	Adipose
49	chr20:10838400-10843800	Weak transcription	NHLF	lung
50	chr20:10838400-10845000	Weak transcription	Lung	lung

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