Variant report

Variant	rs6040193
Chromosome Location	chr20:10828086-10828087
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16991987	1.00[AMR][1000 genomes]
rs56348465	1.00[AMR][1000 genomes]
rs58036995	1.00[AMR][1000 genomes]
rs58565167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6032968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6040190	1.00[AMR][1000 genomes]
rs7261930	1.00[AMR][1000 genomes]
rs7265005	1.00[AMR][1000 genomes]
rs7274741	1.00[AMR][1000 genomes]
rs73896403	1.00[AMR][1000 genomes]
rs73898834	1.00[AMR][1000 genomes]
rs73898836	1.00[AMR][1000 genomes]
rs73898841	1.00[AMR][1000 genomes]
rs73898852	1.00[AMR][1000 genomes]
rs73898854	1.00[AMR][1000 genomes]
rs73898858	1.00[AMR][1000 genomes]
rs73898860	1.00[AMR][1000 genomes]
rs73898863	1.00[AMR][1000 genomes]
rs73898864	1.00[AMR][1000 genomes]
rs73898866	1.00[AMR][1000 genomes]
rs73898870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10823000-10829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:10823200-10829600	Weak transcription	Aorta	Aorta
3	chr20:10824200-10829200	Weak transcription	Osteobl	bone
4	chr20:10824400-10829200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:10824400-10829200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr20:10824400-10829400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr20:10824400-10829400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:10824400-10829600	Weak transcription	Fetal Muscle Leg	muscle
9	chr20:10824400-10829800	Weak transcription	Adipose Nuclei	Adipose
10	chr20:10824400-10838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr20:10824600-10829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr20:10824600-10829000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:10827800-10829000	Weak transcription	HMEC	breast
14	chr20:10827800-10829200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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