Variant report

Variant	rs73898854
Chromosome Location	chr20:10811355-10811356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16991987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56348465	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58036995	1.00[AMR][1000 genomes]
rs58565167	1.00[AMR][1000 genomes]
rs6032968	1.00[AMR][1000 genomes]
rs6040190	1.00[AMR][1000 genomes]
rs6040193	1.00[AMR][1000 genomes]
rs7261930	1.00[AMR][1000 genomes]
rs7265005	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7274741	1.00[AMR][1000 genomes]
rs73896403	1.00[AMR][1000 genomes]
rs73898834	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898836	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898841	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898863	1.00[AMR][1000 genomes]
rs73898864	1.00[AMR][1000 genomes]
rs73898866	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522874	chr20:9899439-10819210	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10799600-10812600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:10809000-10812800	Weak transcription	HMEC	breast
3	chr20:10810600-10813000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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