Variant report
| Variant | rs7265005 |
|---|---|
| Chromosome Location | chr20:10807831-10807832 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs16991987 | 1.00[AMR][1000 genomes] |
| rs56348465 | 1.00[AMR][1000 genomes] |
| rs58036995 | 1.00[AMR][1000 genomes] |
| rs58565167 | 1.00[AMR][1000 genomes] |
| rs6032968 | 1.00[AMR][1000 genomes] |
| rs6040190 | 1.00[AMR][1000 genomes] |
| rs6040193 | 1.00[AMR][1000 genomes] |
| rs7261930 | 1.00[AMR][1000 genomes] |
| rs7274741 | 1.00[AMR][1000 genomes] |
| rs73896403 | 1.00[AMR][1000 genomes] |
| rs73898834 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73898836 | 1.00[AMR][1000 genomes] |
| rs73898841 | 1.00[AMR][1000 genomes] |
| rs73898847 | 0.86[AFR][1000 genomes] |
| rs73898852 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73898854 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73898858 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73898860 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73898863 | 1.00[AMR][1000 genomes] |
| rs73898864 | 1.00[AMR][1000 genomes] |
| rs73898866 | 1.00[AMR][1000 genomes] |
| rs73898870 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv522874 | chr20:9899439-10819210 | Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7265005 | CSTA | trans | lymphoblastoid | seeQTL |
| rs7265005 | JARID2 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:10799600-10812600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
