Variant report

Variant	rs58565167
Chromosome Location	chr20:10833930-10833931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16991987	1.00[AMR][1000 genomes]
rs17189116	0.84[ASN][1000 genomes]
rs56348465	1.00[AMR][1000 genomes]
rs58036995	1.00[AMR][1000 genomes]
rs6032968	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6040190	1.00[AMR][1000 genomes]
rs6040193	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7261930	1.00[AMR][1000 genomes]
rs7265005	1.00[AMR][1000 genomes]
rs7274741	1.00[AMR][1000 genomes]
rs73896403	1.00[AMR][1000 genomes]
rs73898834	1.00[AMR][1000 genomes]
rs73898836	1.00[AMR][1000 genomes]
rs73898841	1.00[AMR][1000 genomes]
rs73898852	1.00[AMR][1000 genomes]
rs73898854	1.00[AMR][1000 genomes]
rs73898858	1.00[AMR][1000 genomes]
rs73898860	1.00[AMR][1000 genomes]
rs73898863	1.00[AMR][1000 genomes]
rs73898864	1.00[AMR][1000 genomes]
rs73898866	1.00[AMR][1000 genomes]
rs73898870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10824400-10838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:10830000-10834200	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:10830000-10838000	Weak transcription	Right Atrium	heart
4	chr20:10830000-10839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:10830000-10845000	Weak transcription	Spleen	Spleen
6	chr20:10830200-10835200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr20:10830200-10835400	Weak transcription	Aorta	Aorta
8	chr20:10830200-10835600	Weak transcription	Stomach Mucosa	stomach
9	chr20:10830200-10843600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr20:10830200-10843800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr20:10830400-10834000	Weak transcription	NHDF-Ad	bronchial
12	chr20:10830400-10835200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr20:10830400-10835200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr20:10830400-10835200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr20:10830400-10835400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr20:10830400-10835400	Weak transcription	HUVEC	blood vessel
17	chr20:10830400-10835400	Weak transcription	Osteobl	bone
18	chr20:10830400-10835600	Weak transcription	HMEC	breast
19	chr20:10830400-10835600	Weak transcription	NHEK	skin
20	chr20:10830400-10838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:10830600-10834000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr20:10830600-10835200	Weak transcription	A549	lung
23	chr20:10832600-10837600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr20:10833400-10836400	Weak transcription	Fetal Intestine Large	intestine

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