Variant report

Variant	rs7274741
Chromosome Location	chr20:10780474-10780475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16991987	1.00[AMR][1000 genomes]
rs56348465	1.00[AMR][1000 genomes]
rs58036995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58565167	1.00[AMR][1000 genomes]
rs6032968	1.00[AMR][1000 genomes]
rs6040190	1.00[AMR][1000 genomes]
rs6040193	1.00[AMR][1000 genomes]
rs7261930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7265005	1.00[AMR][1000 genomes]
rs73896403	1.00[AMR][1000 genomes]
rs73898834	1.00[AMR][1000 genomes]
rs73898836	1.00[AMR][1000 genomes]
rs73898841	1.00[AMR][1000 genomes]
rs73898852	1.00[AMR][1000 genomes]
rs73898854	1.00[AMR][1000 genomes]
rs73898858	1.00[AMR][1000 genomes]
rs73898860	1.00[AMR][1000 genomes]
rs73898863	1.00[AMR][1000 genomes]
rs73898864	1.00[AMR][1000 genomes]
rs73898866	1.00[AMR][1000 genomes]
rs73898870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522874	chr20:9899439-10819210	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10773600-10781200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:10775400-10787200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr20:10775600-10787800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr20:10778000-10782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr20:10779400-10780800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:10779400-10780800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:10779400-10780800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:10779400-10780800	Enhancers	Osteobl	bone
9	chr20:10779400-10781000	Enhancers	HMEC	breast
10	chr20:10779600-10780800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:10780000-10781000	Enhancers	A549	lung
12	chr20:10780000-10782400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr20:10780200-10780800	Weak transcription	Pancreas	Pancrea
14	chr20:10780400-10781200	Enhancers	Stomach Mucosa	stomach
15	chr20:10780400-10782600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr20:10780400-10782600	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links