Variant report

Variant	rs60433205
Chromosome Location	chr9:72567318-72567319
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1027283	0.89[EUR][1000 genomes]
rs10735572	0.98[EUR][1000 genomes]
rs10868378	0.92[EUR][1000 genomes]
rs1121607	0.98[EUR][1000 genomes]
rs1121608	0.98[EUR][1000 genomes]
rs1473520	0.95[EUR][1000 genomes]
rs1493047	0.91[EUR][1000 genomes]
rs1542769	0.92[EUR][1000 genomes]
rs17087686	0.83[AMR][1000 genomes]
rs1873825	0.97[EUR][1000 genomes]
rs1907956	0.98[EUR][1000 genomes]
rs1907959	0.98[EUR][1000 genomes]
rs2035922	0.97[EUR][1000 genomes]
rs2975859	0.91[EUR][1000 genomes]
rs2975860	0.92[EUR][1000 genomes]
rs2975926	0.84[EUR][1000 genomes]
rs3015226	0.92[EUR][1000 genomes]
rs3829096	0.83[AMR][1000 genomes]
rs4413835	0.92[EUR][1000 genomes]
rs4445287	0.92[EUR][1000 genomes]
rs4744584	0.92[EUR][1000 genomes]
rs61416419	0.83[AMR][1000 genomes]
rs7019025	0.97[EUR][1000 genomes]
rs7023406	0.92[EUR][1000 genomes]
rs7029606	0.98[EUR][1000 genomes]
rs7037671	0.98[EUR][1000 genomes]
rs902964	0.94[EUR][1000 genomes]
rs931500	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1043276	chr9:72522231-72571726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72567000-72576600	Weak transcription	HMEC	breast

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