Variant report

Variant	rs2975860
Chromosome Location	chr9:72646341-72646342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72637007..72638664-chr9:72645208..72646717,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1027283	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1027284	0.89[ASN][1000 genomes]
rs10735572	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10780718	0.83[ASN][1000 genomes]
rs10780724	0.83[ASN][1000 genomes]
rs10868291	0.83[ASN][1000 genomes]
rs10868299	0.83[ASN][1000 genomes]
rs10868327	0.82[ASN][1000 genomes]
rs10868358	0.94[ASN][1000 genomes]
rs10868378	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1121607	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1121608	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1389125	0.88[ASN][1000 genomes]
rs1473520	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1493047	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542769	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1586914	0.83[ASN][1000 genomes]
rs1873825	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1907956	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1907959	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2035922	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2975859	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2975926	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3829096	0.83[EUR][1000 genomes]
rs4403478	0.94[ASN][1000 genomes]
rs4413835	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4418399	0.89[ASN][1000 genomes]
rs4445287	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4487845	0.89[ASN][1000 genomes]
rs4490905	0.89[ASN][1000 genomes]
rs4574911	0.88[ASN][1000 genomes]
rs4636269	0.94[ASN][1000 genomes]
rs4744583	0.94[ASN][1000 genomes]
rs4744584	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60433205	0.92[EUR][1000 genomes]
rs7019025	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7023406	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7025044	0.83[ASN][1000 genomes]
rs7029606	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7035415	0.89[ASN][1000 genomes]
rs7037671	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7847934	0.83[ASN][1000 genomes]
rs7863165	0.83[ASN][1000 genomes]
rs7863229	0.94[ASN][1000 genomes]
rs870011	0.89[ASN][1000 genomes]
rs902964	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs931500	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs953372	0.94[ASN][1000 genomes]
rs996375	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72637600-72649200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:72645000-72647000	Enhancers	NHEK	skin
3	chr9:72645400-72646800	Enhancers	Osteobl	bone
4	chr9:72645600-72646400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:72645600-72646800	Enhancers	HMEC	breast
6	chr9:72645800-72646800	Enhancers	NHDF-Ad	bronchial
7	chr9:72645800-72647400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:72646000-72646800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:72646200-72646400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:72646200-72646800	Enhancers	HSMMtube	muscle

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