Variant report

Variant	rs996375
Chromosome Location	chr9:72562749-72562750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1027283	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1027284	0.93[ASN][1000 genomes]
rs10735572	1.00[ASN][1000 genomes]
rs10780718	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780720	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10780724	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868248	0.84[CHB][hapmap]
rs10868291	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868299	0.99[ASN][1000 genomes]
rs10868327	0.99[ASN][1000 genomes]
rs10868358	0.88[ASN][1000 genomes]
rs10868378	0.83[ASN][1000 genomes]
rs1121607	1.00[ASN][1000 genomes]
rs1121608	1.00[ASN][1000 genomes]
rs1389125	0.93[ASN][1000 genomes]
rs1473520	0.91[ASN][1000 genomes]
rs1493046	0.96[ASN][1000 genomes]
rs1493047	1.00[ASN][1000 genomes]
rs1493051	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1493054	0.84[EUR][1000 genomes]
rs1542769	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1565685	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1565686	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1586914	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873825	0.98[ASN][1000 genomes]
rs1907956	1.00[ASN][1000 genomes]
rs1907959	1.00[ASN][1000 genomes]
rs1976234	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2035922	0.98[ASN][1000 genomes]
rs2975859	0.83[ASN][1000 genomes]
rs2975860	0.83[ASN][1000 genomes]
rs2975926	0.83[ASN][1000 genomes]
rs3015226	0.84[ASN][1000 genomes]
rs4403478	0.88[ASN][1000 genomes]
rs4413835	0.93[ASN][1000 genomes]
rs4418399	0.84[ASN][1000 genomes]
rs4445287	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4487845	0.93[ASN][1000 genomes]
rs4490905	0.93[ASN][1000 genomes]
rs4574911	0.93[ASN][1000 genomes]
rs4636269	0.88[ASN][1000 genomes]
rs4744583	0.88[ASN][1000 genomes]
rs4744584	0.84[ASN][1000 genomes]
rs4744959	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60125094	0.85[EUR][1000 genomes]
rs6559850	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6559854	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7019025	0.98[ASN][1000 genomes]
rs7023406	0.83[ASN][1000 genomes]
rs7025044	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029606	1.00[ASN][1000 genomes]
rs7035415	0.93[ASN][1000 genomes]
rs7037671	1.00[ASN][1000 genomes]
rs7847934	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863165	0.99[ASN][1000 genomes]
rs7863229	0.88[ASN][1000 genomes]
rs7869305	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs870011	0.93[ASN][1000 genomes]
rs902964	0.96[ASN][1000 genomes]
rs931500	0.91[ASN][1000 genomes]
rs953372	0.88[ASN][1000 genomes]
rs996376	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1043276	chr9:72522231-72571726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72559800-72562800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:72559800-72563200	Enhancers	Fetal Lung	lung
3	chr9:72560200-72562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:72560200-72562800	Enhancers	NHLF	lung
5	chr9:72560200-72565000	Enhancers	NHDF-Ad	bronchial
6	chr9:72560400-72562800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:72560400-72562800	Enhancers	HSMM	muscle
8	chr9:72560600-72562800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:72560600-72562800	Enhancers	Hela-S3	cervix
10	chr9:72560600-72562800	Enhancers	HMEC	breast
11	chr9:72560600-72562800	Enhancers	NH-A	brain
12	chr9:72560600-72563000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72560800-72562800	Enhancers	HSMMtube	muscle
14	chr9:72561400-72565000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:72562200-72562800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:72562200-72562800	Enhancers	A549	lung
17	chr9:72562200-72563200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:72562200-72565400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:72562400-72562800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:72562400-72563600	Weak transcription	Fetal Brain Male	brain
21	chr9:72562400-72566000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:72562600-72564000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:72562600-72564000	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links