Variant report

Variant	rs7037671
Chromosome Location	chr9:72576998-72576999
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1027283	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1027284	0.93[ASN][1000 genomes]
rs10735572	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780718	1.00[ASN][1000 genomes]
rs10780720	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10780724	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10868291	1.00[ASN][1000 genomes]
rs10868299	0.99[ASN][1000 genomes]
rs10868327	0.99[ASN][1000 genomes]
rs10868358	0.88[ASN][1000 genomes]
rs10868378	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1121607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1121608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389125	0.93[ASN][1000 genomes]
rs1473520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1493046	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1493047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542769	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1586914	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1873825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1907956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907959	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976234	0.88[ASN][1000 genomes]
rs2035922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2975859	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2975860	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2975926	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3015226	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4403478	0.88[ASN][1000 genomes]
rs4413835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4418399	0.84[ASN][1000 genomes]
rs4445287	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4487845	0.93[ASN][1000 genomes]
rs4490905	0.93[ASN][1000 genomes]
rs4574911	0.93[ASN][1000 genomes]
rs4636269	0.88[ASN][1000 genomes]
rs4744583	0.88[ASN][1000 genomes]
rs4744584	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744959	0.85[ASN][1000 genomes]
rs60433205	0.98[EUR][1000 genomes]
rs6559854	0.89[ASN][1000 genomes]
rs7019025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023406	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7025044	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7029606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035415	0.93[ASN][1000 genomes]
rs7847934	1.00[ASN][1000 genomes]
rs7863165	0.99[ASN][1000 genomes]
rs7863229	0.88[ASN][1000 genomes]
rs870011	0.93[ASN][1000 genomes]
rs902964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs931500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs953372	0.88[ASN][1000 genomes]
rs996375	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72576400-72577000	Weak transcription	NHLF	lung
2	chr9:72576400-72577800	Enhancers	NHEK	skin
3	chr9:72576600-72577000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:72576600-72577000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:72576600-72577200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:72576600-72577200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:72576600-72577200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:72576600-72577200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:72576600-72577200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:72576600-72577200	Enhancers	Placenta	Placenta
11	chr9:72576600-72577200	Enhancers	Hela-S3	cervix
12	chr9:72576600-72577200	Enhancers	HMEC	breast
13	chr9:72576600-72577200	Enhancers	Osteobl	bone
14	chr9:72576600-72577600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:72576600-72577800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:72576800-72577000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:72576800-72577000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:72576800-72577200	Enhancers	NHDF-Ad	bronchial
19	chr9:72576800-72577400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:72576800-72578000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:72576800-72580400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr9:72576800-72580600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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