Variant report

Variant	rs60433687
Chromosome Location	chr4:26526698-26526699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11933322	1.00[EUR][1000 genomes]
rs12054535	1.00[EUR][1000 genomes]
rs16878448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878474	1.00[EUR][1000 genomes]
rs1800856	1.00[EUR][1000 genomes]
rs1994551	1.00[EUR][1000 genomes]
rs2309411	1.00[EUR][1000 genomes]
rs28678865	1.00[EUR][1000 genomes]
rs56672477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59744623	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822462	1.00[EUR][1000 genomes]
rs6856499	1.00[EUR][1000 genomes]
rs73112740	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73112752	1.00[ASN][1000 genomes]
rs73114606	1.00[EUR][1000 genomes]
rs73114608	1.00[EUR][1000 genomes]
rs73810755	1.00[EUR][1000 genomes]
rs73810793	1.00[EUR][1000 genomes]
rs73810795	1.00[EUR][1000 genomes]
rs73810797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26523200-26530800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26523800-26527600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:26523800-26527800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:26523800-26527800	Enhancers	HSMMtube	muscle
5	chr4:26523800-26528000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:26524400-26527800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:26525000-26526800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:26525000-26526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:26525000-26526800	Weak transcription	NH-A	brain
10	chr4:26525600-26526800	Weak transcription	Osteobl	bone
11	chr4:26525600-26527800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:26526000-26528000	Enhancers	NHDF-Ad	bronchial
13	chr4:26526600-26527400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:26526600-26527800	Enhancers	HSMM	muscle
15	chr4:26526600-26527800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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