Variant report

Variant	rs28678865
Chromosome Location	chr4:26559633-26559634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10015526	0.96[ASN][1000 genomes]
rs10470786	1.00[MEX][hapmap]
rs10805265	1.00[MEX][hapmap]
rs10939120	0.96[ASN][1000 genomes]
rs11933322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11937874	1.00[MEX][hapmap]
rs12054535	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12648115	0.96[ASN][1000 genomes]
rs166353	0.82[JPT][hapmap];1.00[MEX][hapmap]
rs16878448	1.00[EUR][1000 genomes]
rs16878450	1.00[EUR][1000 genomes]
rs16878454	0.96[ASN][1000 genomes]
rs16878474	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1800856	1.00[EUR][1000 genomes]
rs1994551	1.00[EUR][1000 genomes]
rs2007586	0.96[ASN][1000 genomes]
rs2171750	0.96[ASN][1000 genomes]
rs2309411	1.00[EUR][1000 genomes]
rs3899075	0.96[ASN][1000 genomes]
rs4285073	1.00[MEX][hapmap]
rs4572860	0.96[ASN][1000 genomes]
rs4583745	1.00[MEX][hapmap]
rs4594713	1.00[MEX][hapmap]
rs4692122	0.96[ASN][1000 genomes]
rs4692123	0.96[ASN][1000 genomes]
rs4692125	0.96[ASN][1000 genomes]
rs4692547	0.96[ASN][1000 genomes]
rs56672477	1.00[EUR][1000 genomes]
rs58796261	1.00[EUR][1000 genomes]
rs59744623	1.00[EUR][1000 genomes]
rs60433687	1.00[EUR][1000 genomes]
rs6821178	0.96[ASN][1000 genomes]
rs6822462	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838579	0.96[ASN][1000 genomes]
rs6838762	0.96[ASN][1000 genomes]
rs6856499	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73112740	1.00[EUR][1000 genomes]
rs73112763	0.85[ASN][1000 genomes]
rs73114606	1.00[EUR][1000 genomes]
rs73114608	1.00[EUR][1000 genomes]
rs73810755	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73810790	0.96[ASN][1000 genomes]
rs73810792	0.96[ASN][1000 genomes]
rs73810793	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73810795	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73810797	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7667400	1.00[MEX][hapmap]
rs7669392	1.00[MEX][hapmap]
rs7672066	1.00[MEX][hapmap]
rs7674362	1.00[MEX][hapmap]
rs970730	0.96[ASN][1000 genomes]
rs970731	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26557800-26560800	Enhancers	Osteobl	bone
2	chr4:26558000-26560800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:26558000-26561000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:26558200-26560600	Enhancers	HSMMtube	muscle
5	chr4:26558200-26560800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:26558400-26559800	Enhancers	NHLF	lung
7	chr4:26558400-26560000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:26558400-26561000	Enhancers	NHDF-Ad	bronchial
9	chr4:26559400-26559800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:26559600-26559800	Enhancers	HSMM	muscle
11	chr4:26559600-26561000	Enhancers	Muscle Satellite Cultured Cells	--

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