Variant report

Variant	rs3899075
Chromosome Location	chr4:26570153-26570154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26567486..26569204-chr4:26569511..26572156,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10015526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10939120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933322	1.00[ASN][1000 genomes]
rs12054535	1.00[ASN][1000 genomes]
rs12648115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166353	0.85[JPT][hapmap]
rs16878454	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878474	1.00[ASN][1000 genomes]
rs2007586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171750	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28678865	0.96[ASN][1000 genomes]
rs4349588	1.00[TSI][hapmap]
rs4572860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6821178	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822462	1.00[ASN][1000 genomes]
rs6838579	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838762	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856499	1.00[ASN][1000 genomes]
rs73112763	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73810755	1.00[ASN][1000 genomes]
rs73810790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810792	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810793	1.00[ASN][1000 genomes]
rs73810795	1.00[ASN][1000 genomes]
rs73810797	1.00[ASN][1000 genomes]
rs970730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970731	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26567000-26573600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:26567800-26571200	Enhancers	HUVEC	blood vessel
3	chr4:26568400-26575000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26569400-26570200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:26569400-26571000	Enhancers	NHDF-Ad	bronchial
6	chr4:26569600-26570600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:26569600-26571000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:26569600-26571200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:26569600-26572000	Enhancers	NH-A	brain
10	chr4:26569600-26572200	Enhancers	HSMM	muscle
11	chr4:26569800-26570200	Enhancers	HSMMtube	muscle
12	chr4:26569800-26570400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:26569800-26570400	Enhancers	NHLF	lung
14	chr4:26569800-26570600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:26569800-26570600	Enhancers	Fetal Lung	lung
16	chr4:26569800-26570600	Enhancers	HMEC	breast
17	chr4:26569800-26570600	Enhancers	K562	blood
18	chr4:26569800-26570600	Enhancers	NHEK	skin
19	chr4:26569800-26570800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:26569800-26570800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:26569800-26571000	Enhancers	Hela-S3	cervix
22	chr4:26569800-26571000	Enhancers	Osteobl	bone
23	chr4:26570000-26570200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:26570000-26570400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr4:26570000-26570400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:26570000-26570400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:26570000-26570600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:26570000-26570800	Flanking Active TSS	A549	lung
29	chr4:26570000-26574800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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