Variant report

Variant	rs2007586
Chromosome Location	chr4:26568223-26568224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26567486..26569204-chr4:26569511..26572156,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10015526	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10939120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933322	1.00[ASN][1000 genomes]
rs12054535	1.00[ASN][1000 genomes]
rs12511054	0.87[AFR][1000 genomes]
rs12648115	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387542	0.81[AFR][1000 genomes]
rs166353	0.85[JPT][hapmap]
rs16878454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878474	1.00[ASN][1000 genomes]
rs2171750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28678865	0.96[ASN][1000 genomes]
rs3899075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349588	1.00[TSI][hapmap]
rs4572860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692122	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692123	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692547	1.00[ASN][1000 genomes]
rs6821178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822462	1.00[ASN][1000 genomes]
rs6838579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856499	1.00[ASN][1000 genomes]
rs73112763	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73810755	1.00[ASN][1000 genomes]
rs73810790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810793	1.00[ASN][1000 genomes]
rs73810795	1.00[ASN][1000 genomes]
rs73810797	1.00[ASN][1000 genomes]
rs9291485	0.87[AMR][1000 genomes]
rs970730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26567000-26573600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:26567200-26568400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:26567400-26568400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26567400-26568600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:26567400-26568600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:26567400-26568600	Enhancers	Osteobl	bone
7	chr4:26567600-26568400	Enhancers	NH-A	brain
8	chr4:26567600-26568600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:26567600-26568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:26567800-26568400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:26567800-26568400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:26567800-26568600	Enhancers	Hela-S3	cervix
13	chr4:26567800-26571200	Enhancers	HUVEC	blood vessel
14	chr4:26568000-26568600	Enhancers	HSMM	muscle
15	chr4:26568200-26568400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:26568200-26568400	Enhancers	A549	lung
17	chr4:26568200-26569400	Weak transcription	NHDF-Ad	bronchial
18	chr4:26568200-26570000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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