Variant report

Variant	rs4572860
Chromosome Location	chr4:26558496-26558497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10015526	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10939120	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933322	1.00[ASN][1000 genomes]
rs12054535	1.00[ASN][1000 genomes]
rs12648115	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387542	0.84[AFR][1000 genomes]
rs16878454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878474	1.00[ASN][1000 genomes]
rs2007586	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171750	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28678865	0.96[ASN][1000 genomes]
rs3899075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692122	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692123	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692125	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692547	1.00[ASN][1000 genomes]
rs6821178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822462	1.00[ASN][1000 genomes]
rs6838579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856499	1.00[ASN][1000 genomes]
rs73112763	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73810755	1.00[ASN][1000 genomes]
rs73810790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810793	1.00[ASN][1000 genomes]
rs73810795	1.00[ASN][1000 genomes]
rs73810797	1.00[ASN][1000 genomes]
rs9291485	0.87[AMR][1000 genomes]
rs970730	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26557800-26558800	Weak transcription	NH-A	brain
2	chr4:26557800-26560800	Enhancers	Osteobl	bone
3	chr4:26558000-26558600	ZNF genes & repeats	Fetal Muscle Leg	muscle
4	chr4:26558000-26559400	Enhancers	HSMM	muscle
5	chr4:26558000-26559600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:26558000-26560800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:26558000-26561000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:26558200-26558600	Enhancers	Fetal Muscle Trunk	muscle
9	chr4:26558200-26559000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:26558200-26560600	Enhancers	HSMMtube	muscle
11	chr4:26558200-26560800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:26558400-26558800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr4:26558400-26558800	Enhancers	Colon Smooth Muscle	Colon
14	chr4:26558400-26559000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr4:26558400-26559400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:26558400-26559600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:26558400-26559800	Enhancers	NHLF	lung
18	chr4:26558400-26560000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:26558400-26561000	Enhancers	NHDF-Ad	bronchial

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