Variant report

Variant	rs6838762
Chromosome Location	chr4:26534959-26534960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10015526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10939120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933322	1.00[ASN][1000 genomes]
rs12054535	1.00[ASN][1000 genomes]
rs12648115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166353	0.85[JPT][hapmap]
rs16878454	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878474	1.00[ASN][1000 genomes]
rs2007586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171750	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28678865	0.96[ASN][1000 genomes]
rs3899075	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349588	1.00[TSI][hapmap]
rs4572860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692547	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6821178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822462	1.00[ASN][1000 genomes]
rs6838579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856499	1.00[ASN][1000 genomes]
rs73112763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73810755	1.00[ASN][1000 genomes]
rs73810790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73810793	1.00[ASN][1000 genomes]
rs73810795	1.00[ASN][1000 genomes]
rs73810797	1.00[ASN][1000 genomes]
rs970730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970731	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6838762	GUCY1B3	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26531000-26535400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:26532200-26536600	Weak transcription	HSMMtube	muscle

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