Variant report

Variant	rs6043440
Chromosome Location	chr20:15665190-15665191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6034258	0.86[ASN][1000 genomes]
rs6034259	0.84[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6043438	0.84[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6043442	0.87[CHD][hapmap];0.93[JPT][hapmap]
rs6043443	0.87[CHD][hapmap];0.93[JPT][hapmap]
rs6110751	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6110752	0.90[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6110754	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs8123014	0.87[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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