Variant report

Variant	rs6034259
Chromosome Location	chr20:15664008-15664009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs201221	0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs201222	0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs201223	0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs6034258	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6034260	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs6034267	0.85[CEU][hapmap]
rs6043438	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043440	0.84[CHD][hapmap];0.93[JPT][hapmap]
rs6043442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap]
rs6043443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap]
rs6043447	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs6043448	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs6043451	0.81[EUR][1000 genomes]
rs6043472	0.87[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6105454	0.81[CEU][hapmap]
rs6110746	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6110747	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs6110751	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6110752	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6110754	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7261305	0.82[CEU][hapmap]
rs7263789	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs7269539	0.82[EUR][1000 genomes]
rs8122835	0.82[EUR][1000 genomes]
rs8123014	0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15661200-15664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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